Mercurial > repos > p.lucas > ssuisserotyping_pipeline
comparison SsuisSerotyping_pipeline.xml @ 3:d30476d83afe draft default tip
Fix output error
| author | p.lucas |
|---|---|
| date | Thu, 09 May 2019 05:05:32 -0400 |
| parents | fbac2ea88cf3 |
| children |
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| 2:fbac2ea88cf3 | 3:d30476d83afe |
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| 66 <param type="text" name="forward" value="_R2" /> | 66 <param type="text" name="forward" value="_R2" /> |
| 67 </when> | 67 </when> |
| 68 </conditional> | 68 </conditional> |
| 69 </inputs> | 69 </inputs> |
| 70 <outputs> | 70 <outputs> |
| 71 <data name="output1" format="txt" label="${tool.name} on ${on_string}: Results_FinalResults.txt" /> | 71 <data name="output1" format="txt" label="${tool.name} on ${on_string}: Results_FinalResults.txt" from_work_dir="Results_FinalResults.txt"/> |
| 72 <data name="output2" format="txt" label="${tool.name} on ${on_string}: Results_MLSTResults.txt" /> | 72 <data name="output2" format="txt" label="${tool.name} on ${on_string}: Results_MLSTResults.txt" from_work_dir="Results_MLSTResults.txt"/> |
| 73 <data name="output3" format="txt" label="${tool.name} on ${on_string}: Results_recN__fullgenes__recN_full__results.txt" /> | 73 <data name="output3" format="txt" label="${tool.name} on ${on_string}: Results_recN__fullgenes__recN_full__results.txt" from_work_dir="Results_recN__fullgenes__recN_full__results.txt" /> |
| 74 <data name="output4" format="txt" label="${tool.name} on ${on_string}: Results_speciesConfirmation.txt" /> | 74 <data name="output4" format="txt" label="${tool.name} on ${on_string}: Results_speciesConfirmation.txt" from_work_dir="Results_speciesConfirmation.txt" /> |
| 75 <data name="output5" format="txt" label="${tool.name} on ${on_string}: Results_FinalSerotypingResults.txt" /> | 75 <data name="output5" format="txt" label="${tool.name} on ${on_string}: Results_FinalSerotypingResults.txt" from_work_dir="Results_FinalSerotypingResults.txt" /> |
| 76 <data name="output6" format="txt" label="${tool.name} on ${on_string}: Results_InitialCapsuleResults.txt" /> | 76 <data name="output6" format="txt" label="${tool.name} on ${on_string}: Results_InitialCapsuleResults.txt" from_work_dir="Results_InitialCapsuleResults.txt" /> |
| 77 <data name="output7" format="txt" label="${tool.name} on ${on_string}: Results_VirulenceFactors__fullgenes__Virulence__results.txt" /> | 77 <data name="output7" format="txt" label="${tool.name} on ${on_string}: Results_VirulenceFactors__fullgenes__Virulence__results.txt" from_work_dir="Results_VirulenceFactors__fullgenes__Virulence__results.txt" /> |
| 78 <data name="output8" format="txt" label="${tool.name} on ${on_string}: Results_VirulenceFactorResults.txt" /> | 78 <data name="output8" format="txt" label="${tool.name} on ${on_string}: Results_VirulenceFactorResults.txt" from_work_dir="Results_VirulenceFactorResults.txt" /> |
| 79 </outputs> | 79 </outputs> |
| 80 <tests> | 80 <tests> |
| 81 <test> | 81 <test> |
| 82 <param name="input1" value="/home/plucas/TEST/SsuisSerotyping_pipeline/input_fastq/SS1218_IonXpress_008_R_2016_02_23.soft_clean.trimmomatic_trimmed.fastq"/> | 82 <param name="input1" value="/home/plucas/TEST/SsuisSerotyping_pipeline/input_fastq/SS1218_IonXpress_008_R_2016_02_23.soft_clean.trimmomatic_trimmed.fastq"/> |
| 83 <output name="output1" file="/home/plucas/TEST/SsuisSerotyping_pipeline/results/Results_FinalResults.txt"/> | 83 <output name="output1" file="/home/plucas/TEST/SsuisSerotyping_pipeline/results/Results_FinalResults.txt"/> |