Mercurial > repos > p.lucas > extract_fasta_subsequence
comparison exseq_multi.xml @ 5:76a5d10c40f0 draft
Uploaded
| author | p.lucas |
|---|---|
| date | Wed, 26 Sep 2018 08:43:11 -0400 |
| parents | 75d3df84f68a |
| children |
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| 4:75d3df84f68a | 5:76a5d10c40f0 |
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| 1 <tool id="extract_align" name="Extract sub sequence of multifasta file." version="0.1.0"> | 1 <tool id="extract_align" name="Extract sub sequence of multifasta file." version="0.1.0"> |
| 2 <description>Extract sub sequence of multifasta file.</description> | 2 <description>Extract sub sequence of multifasta file.</description> |
| 3 <stdio> | 3 <stdio> |
| 4 <exit_code range="1:" /> | 4 <exit_code range="1:" /> |
| 5 </stdio> | 5 </stdio> |
| 6 <version_command> | 6 <command interpreter="python3"> |
| 7 python3 '$__tool_directory__/exseq_multi.py -i $inputfile -s $startpos -e $endpos -o $output' | 7 exseq_multi.py -i $inputfile -s $startpos -e $endpos -o $output |
| 8 </version_command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param type="data" name="inputfile" format="fasta" label="Select your multifasta file :" /> | 10 <param type="data" name="inputfile" format="fasta" label="Select your multifasta file :" /> |
| 11 <param type="text" name="startpos" label="Start position to cut :" /> | 11 <param type="text" name="startpos" label="Start position to cut :" /> |
| 12 <param type="text" name="endpos" label="End position to stop the cut :" /> | 12 <param type="text" name="endpos" label="End position to stop the cut :" /> |
| 13 </inputs> | 13 </inputs> |