comparison abhaddock_wrapper.xml @ 7:9a64e7a9c3aa draft

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6:81d1ab123329

  </inputs>
  <outputs>
    <data name="output" format="pdb" />
  </outputs>
  <help>
<!--
usage: ab_haddock_format.py [-h] pdb out chain

Formats the antibody to fit the HADDOCK requirements with the
specified chain id and returns the list of residues belonging
to the HV loops defined according to the HADDOCK friendly format.

*** The antibody has to be numbered according to the Chothia scheme ***

Usage:
    python haddock-format.py <chothia numbered antibody> <output .pdb file> <chain_id>

Example:
    python 4G6K_ch.pdb 4G6K-HADDOCK.pdb A

Author: Francesco Ambrosetti

  out         Path to the output PDB file
  chain       Chain id to use for the HADDOCK-formatted PDB structure

optional arguments:
  -h, --help  show this help message and exit
-->
  </help>
</tool>

7:9a64e7a9c3aa

  </inputs>
  <outputs>
    <data name="output" format="pdb" />
  </outputs>
  <help>
usage: ab_haddock_format.py [-h] pdb out chain

Formats the antibody to fit the HADDOCK requirements with the
specified chain id and returns the list of residues belonging
to the HV loops defined according to the HADDOCK friendly format.

*** The antibody has to be numbered according to the Chothia scheme ***

Usage:
    python haddock-format.py 'chothia numbered antibody' 'output .pdb file' 'chain_id'

Example:
    python 4G6K_ch.pdb 4G6K-HADDOCK.pdb A

Author: Francesco Ambrosetti

  out         Path to the output PDB file
  chain       Chain id to use for the HADDOCK-formatted PDB structure

optional arguments:
  -h, --help  show this help message and exit
  </help>
</tool>