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author | oscar_b |
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date | Wed, 14 Nov 2018 14:15:24 -0500 |
parents | e25074cb4dbb |
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<tool id="blosum" name="Blosum" version="0.5.0"> <description>Scores for peptide alignment by sequence</description> <requirements> <requirement type="package" version="8">openjdk</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ java -Djava.awt.headless=true -jar '$__tool_directory__/Blosum.jar' '$input' ]]></command> <inputs> <param name="input" type="data" format="tabular" label="Peptide Sequences"/> </inputs> <outputs> <data name="output" format="tabular" from_work_dir="BlosumOutput.csv" label="peptides with scores ${on_string}"/> </outputs> <tests> <test> <param name="input" ftype="tabular" value="input.csv"/> <output name="output"> <assert_contents> <has_text text="33"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ This program calculates a score of similitude between peptide sequences as referenced to a master peptide sequence of interest ]]></help> <citations> <citation type="doi">10.1021/ja507164a</citation> </citations> </tool>