diff Blosum.xml @ 1:164c74b7d943 draft

planemo upload commit 524a261eaa7126369f1b292aa44ce541f720fd83

--- a/Blosum.xml	Wed Oct 31 13:31:49 2018 -0400
+++ b/Blosum.xml	Wed Nov 14 13:34:09 2018 -0500
@@ -1,23 +1,27 @@
 <tool id="blosum" name="Blosum" version="0.5.0">
     <description>Scores for peptide alignment by sequence</description>
     <requirements>
-       <requirement type="package">openjdk</requirement>
+       <requirement type="package" version="8">openjdk</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[        
         java -Djava.awt.headless=true -jar '$__tool_directory__/Blosum.jar'
     ]]></command>
     <inputs>
-        <param format="csv" name="input" type="data" label="Peptide Sequences"/>
+        <param name="input" type="data" format="tabular" label="Peptide Sequences"/>
     </inputs>      
     <outputs>
-        <data format="csv" name="output" from_work_dir="output.csv" label="peptides with scores ${on_string}"/>
+        <data name="output" format="tabular" from_work_dir="output.csv" label="peptides with scores ${on_string}"/>
     </outputs>
     <tests>
         <test>
+            <param name="input" ftype="tabular" value="input.csv"/>
+            <output name="output">
+                <assert_contents>
+                    <has_text text="33"/>
+                </assert_contents>
+            </output>
         </test>
     </tests>
-
-    
     <help><![CDATA[
 This program calculates a score of similitude between peptide sequences as referenced to a master peptide sequence of interest
     ]]></help>