comparison Blosum.xml @ 0:4438273d5b7f draft

planemo upload commit 5db33c9a397f90bca5dc1370287adbc2896ffd17-dirty

0:4438273d5b7f

<tool id="blosum" name="Blosum" version="0.5.0">
    <description>Scores for peptide alignment by sequence</description>
    <requirements>
       <requirement type="package">openjdk</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[        
        java -Djava.awt.headless=true -jar '$__tool_directory__/Blosum.jar'
    ]]></command>
    <inputs>
        <param format="csv" name="input" type="data" label="Peptide Sequences"/>
    </inputs>      
    <outputs>
        <data format="csv" name="output" from_work_dir="output.csv" label="peptides with scores ${on_string}"/>
    </outputs>
    <tests>
        <test>
        </test>
    </tests>

    
    <help><![CDATA[
This program calculates a score of similitude between peptide sequences as referenced to a master peptide sequence of interest
    ]]></help>
    <citations>
        <citation type="doi">10.1021/ja507164a</citation>
    </citations>
</tool>