directory /test-data/references/ @ 30:fce825ec2c84 draft default tip

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file 01-prepro-flash.html 45706 -rw-r--r--
file 01-prepro-flash.tsv 1981071 -rw-r--r--
file 01-prepro-vsearch.fasta 62777428 -rw-r--r--
file 01-prepro-vsearch.html 44068 -rwxr-xr-x
file 01-prepro-vsearch.tsv 2391618 -rw-r--r--
file 02-clustering_denoising.biom 10200120 -rwxr-xr-x
file 02-clustering_denoising_compo.tsv 2055862 -rw-r--r--
file 02-clustering_fastidious.biom 10307857 -rwxr-xr-x
file 02-clustering_fastidious.fasta 58521242 -rw-r--r--
file 02-clustering_fastidious_compo.tsv 2055862 -rw-r--r--
file 03-chimera.biom 10307582 -rwxr-xr-x
file 03-chimera.fasta 58519664 -rw-r--r--
file 03-chimera.html 17503 -rwxr-xr-x
file 04-filters.biom 6697 -rw-r--r--
file 04-filters.excluded 4320306 -rw-r--r--
file 04-filters.fasta 19884 -rw-r--r--
file 04-filters.html 137142 -rwxr-xr-x
file 05-itsx-excluded.fasta 0 -rw-r--r--
file 05-itsx.biom 6697 -rw-r--r--
file 05-itsx.fasta 19884 -rw-r--r--
file 05-itsx.html 125887 -rwxr-xr-x
file 06-affiliation.biom 43850 -rwxr-xr-x
file 06-affiliation.html 22588 -rwxr-xr-x
file 07-affiliation_deleted.biom 20223 -rwxr-xr-x
file 07-affiliation_deleted.fasta 9929 -rw-r--r--
file 07-affiliation_deleted.html 138362 -rwxr-xr-x
file 07-affiliation_masked.biom 32219 -rwxr-xr-x
file 07-affiliation_masked.html 138332 -rwxr-xr-x
file 07-impacted_clusters_deleted.tsv 19880 -rwxr-xr-x
file 07-impacted_clusters_deleted_multihit.tsv 124 -rw-r--r--
file 07-impacted_clusters_masked.tsv 20090 -rwxr-xr-x
file 07-impacted_clusters_masked_multihit.tsv 124 -rw-r--r--
file 08-affiliation_postprocessed.biom 43875 -rwxr-xr-x
file 08-affiliation_postprocessed.compo.tsv 666 -rwxr-xr-x
file 08-affiliation_postprocessed.fasta 19884 -rwxr-xr-x
file 09-normalisation.biom 39365 -rwxr-xr-x
file 09-normalisation.fasta 18266 -rwxr-xr-x
file 09-normalisation.html 127937 -rwxr-xr-x
file 10-clustersStat.html 189524 -rwxr-xr-x
file 11-affiliationsStat.html 220362 -rwxr-xr-x
file 12-biom2tsv-affiliation_multihit.tsv 124 -rw-r--r--
file 12-biom2tsv.tsv 32687 -rw-r--r--
file 13-affiliation_multihit.tsv 9056 -rw-r--r--
file 13-affiliation_std.biom 28822 -rw-r--r--
file 14-tsv2biom.biom 39984 -rwxr-xr-x
file 14-tsv2biom.fasta 15043 -rw-r--r--
file 15-tree-mafft.html 30381 -rwxr-xr-x
file 15-tree-mafft.nwk 2058 -rwxr-xr-x
file 16-phylo_import.Rdata 46065 -rw-r--r--
file 16-phylo_import.nb.html 1174390 -rwxr-xr-x
file 18-phylo_alpha_div.nb.html 1366830 -rwxr-xr-x
file 18-phylo_alpha_div.tsv 2530 -rw-r--r--
file 19-phylo_beta_div.nb.html 808490 -rwxr-xr-x
file 21-phylo_clustering.nb.html 1116237 -rwxr-xr-x
file 22-phylo_manova.nb.html 670817 -rwxr-xr-x
file 23-deseq2_preprocess.Rdata 1141746 -rwxr-xr-x
file 24-deseq2_visualisation.nb.html 1726675 -rwxr-xr-x
file 25-frogsfunc_copynumbers_marker.tsv 274 -rwxr-xr-x
file 25-frogsfunc_placeseqs.biom 262487 -rwxr-xr-x
file 25-frogsfunc_placeseqs.fasta 4173 -rw-r--r--
file 25-frogsfunc_placeseqs_closests_ref_sequences.txt 22390 -rwxr-xr-x
file 25-frogsfunc_placeseqs_excluded.txt 18 -rwxr-xr-x
file 25-frogsfunc_placeseqs_report.html 49768 -rwxr-xr-x
file 25-frogsfunc_placeseqs_tree.nwk 639327 -rwxr-xr-x
file 27-frogsfunc_functions_excluded.txt 18 -rw-r--r--
file 27-frogsfunc_functions_marker_norm.tsv 5821 -rwxr-xr-x
file 27-frogsfunc_functions_report.html 1959503 -rwxr-xr-x
file 27-frogsfunc_functions_unstrat.tsv 753966 -rwxr-xr-x
file 27-frogsfunc_functions_weighted_nsti.tsv 3181 -rwxr-xr-x
file 28-frogsfunc_pathways_predictions.tsv 245133 -rwxr-xr-x
file 28-frogsfunc_pathways_report.html 435446 -rwxr-xr-x
file 28-frogsfunc_pathways_unstrat.tsv 354024 -rwxr-xr-x
file demultiplex_summary.txt 150 -rw-r--r--
file unifrac.tsv 73715 -rw-r--r--