diff test-data/databases/frogs_picrust2_pathways.loc @ 25:dfaf556d2a20 draft

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 281ada90f8ce8630844ca000aa676ed55901661b-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/databases/frogs_picrust2_pathways.loc	Wed Jun 07 09:00:18 2023 +0000
@@ -0,0 +1,32 @@
+# Copyright (C) 2022 INRA
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+#
+#This is a sample file that enables tools FROGS_frogsfunc_pathways to map pathways to reactions. 
+#The default mapfile maps MetaCyc reactions to prokaryotic MetaCyc pathways.
+#
+#PICRUSt2 files are present in the arborescence of PICRUSt2. Please consult 
+#PICRUSt2 documentation to find out where they are located in your environment.
+#
+#If you are not comfortable with picrust2 command lines, just create .loc files 
+#with EXAMPLE FOR TEST files remembering to replace <PATH_TO> with the real path.
+#
+#<db_id>	<db_name>	<marker_gene>	<path_to_mapfiles>
+#
+#First column will be the visible name in galaxy.
+#
+#
+# EXAMPLE FOR TEST :
+pro_metacyc_pathway	Metacyc	16S	${__HERE__}/frogs_picrust2_db/pathway_mapfiles/metacyc_path2rxn_struc_filt_pro.txt
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