diff frogsfunc_functions.xml @ 26:9cb4b18902d9 draft

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 4c1e147969d4c641559b20c523f4822082b6ba0c

--- a/frogsfunc_functions.xml	Wed Jun 07 09:00:18 2023 +0000
+++ b/frogsfunc_functions.xml	Thu Apr 03 05:58:59 2025 +0000
@@ -15,7 +15,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 -->
-<tool id="FROGSFUNC_step3_functions" name="FROGSFUNC_2_functions" version= "@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="FROGSFUNC_step2_functions" name="FROGSFUNC_2_functions" version= "@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>Calculates functions abundances in each sample. </description>
 
   <macros>
@@ -29,6 +29,7 @@
         <exit_code range="1:" />
         <exit_code range=":-1" />
     </stdio>
+    <code file="functions_validator.py" />
     <command >
        frogsfunc_functions.py
             @CPUS@
@@ -79,7 +80,6 @@
 				<column name='path' index='2' />
 				<column name='traits' index='3' />
                 <filter type="param_value" ref="category" column="0" />   
- 		<validator type="expression" message="'EC' is the default database used by PICRUSt2. 'EC' or 'KO' must be at least selected. Other tables are optionnal">"EC" in value or "KO" in value</validator>               
             </options>
         </param>
         <param argument="--max-nsti" type="float" label="NSTI cut-off" help="Any sequence with an NSTI above this threshold will be out. (default: 2)" value="2" min="0" optional="false" />