diff test-data/databases/frogs_picrust2_functions.loc @ 27:646bee69560f draft

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit b6afc353bed8654c3a9ca56d194ecc7827d9ca18

--- a/test-data/databases/frogs_picrust2_functions.loc	Thu Apr 03 05:58:59 2025 +0000
+++ b/test-data/databases/frogs_picrust2_functions.loc	Wed Apr 30 06:13:02 2025 +0000
@@ -18,16 +18,22 @@
 #the copy number of gene families present in the predicted genome for OTU, 
 # given a tree and a set of known trait values (FROGS_frogsfunc_placeseqs).
 #
-#PICRUSt2 files are present in the arborescence of PICRUSt2. Please consult 
-#PICRUSt2 documentation to find out where they are located in your environment.
+#PICRUSt2 files are present in the arborescence of PICRUSt2. 
+#
+#<value_as_marker_gene>	<name_as_fun_db>	<fun_db_or_path_to_marker_copy_numbers>	<fun_db_or_path_to_fun_copy_numbers>	<version>
+
+# For 16S data (see the 6 first lines), PICRUSt2 only takes the db name of the database as input (for exemple EC).
+# With ITS and 18S data, you have to specify the path of marker gene counts files.
+#
 #
-#If you are not comfortable with picrust2 command lines, just create .loc files 
-#with EXAMPLE FOR TEST files remembering to replace <PATH_TO> with the real path.
+# Bellow you will find out how to implement this loc file.
 #
-#<marker_gene>	<db>	<picrust2_input_marker>	<picrust2_input_function>	<picrust_version>
+# The indicated path is the one if you do not change the default galaxy config of conda directory.
+# Just adapt path by replacing <Galaxy_dir> with the real path and eventually the picrust version.
 #
-#With 16S data, PICRUSt2 only takes the dname of the database as input (for exemple EC).
-#With ITS and 18S data, you have to specify the path of marke gene counts files.
+# If you are not using this default conda behavior, please consult PICRUSt2 documentation to find out where they are located in your environment.
+#
+#
 #
 # EXAMPLE FOR TEST :
 16S	EC	EC	EC	2.5.1