Mercurial > repos > oinizan > frogs

diff normalisation.xml @ 12:613b7551f28b draft

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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 0c3aee486a7e9b369ad4c037c2f588236acad117-dirty
author oinizan
date Mon, 16 May 2022 14:19:09 +0000
parents ab9e3c8ab443
children 4dd70eba5941
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--- a/normalisation.xml	Fri May 13 15:33:27 2022 +0000
+++ b/normalisation.xml	Mon May 16 14:19:09 2022 +0000
@@ -51,7 +51,7 @@
 		<conditional name="sampling_method">
 			<param name="sampling_by_min" type="select" label="Sampling method" help='Sampling by the number of sequences of the smallest sample, or select a number manually' display='radio'>
             	<option value="yes" selected="true">Sampling by the number of sequences of the smallest sample</option>
-            	<option value="no">Select a number of reads</option>
+            	<option value="no">Select a number of sequences</option>
 			</param>
 		<when value="no">
 			<param name="num_reads" type="integer" optional="true" min="1" value="" label="Number of reads" help="The final number of reads per sample." />
@@ -106,12 +106,15 @@
 
 Sequence normalisation method :
 
- - **Sampling by the number of sequences of the smallest sample** : Automatically detects the number of reads of the smallest sample, and selects this number for all other samples.
- - **Select number of reads** : Manually select a number of reads.
+ - **Sampling by the number of sequences of the smallest sample** : Automatically detects the number of sequences of the smallest sample, and selects this number for all other samples.
+ - **Select number of sequences** : Manually select a number of sequences.
+
+With this number, a random draw of sequences is made and once normalisation is complete, each sample will contain the specified number of sequences.
 
 .. class:: warningmark
 
 If the **remove samples** option is enabled, samples whose total number of sequences is lower than the specified number will be removed inside the abundance table. 
+
 If the option is disabled, the samples will be kept in the analysis but with a number of sequences lower than the specified number (the total number of the sample).
 
 .. class:: h3