diff preprocess.xml @ 22:57824202c333 draft

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 2472c451b3e27c98ce60b2e56a78fd3fbe0fb2d6-dirty
author oinizan
date Mon, 22 May 2023 08:02:36 +0000
parents 74a9b83110a7
children 5cd82f533de6
line wrap: on
line diff
--- a/preprocess.xml	Thu Mar 30 06:09:01 2023 +0000
+++ b/preprocess.xml	Mon May 22 08:02:36 2023 +0000
@@ -306,13 +306,13 @@
                             <param name="merge_software" value="flash" />
                             <param name="expected_amplicon_size" value="420" />
                         </conditional>
-                        <param name="keep_unmerged" value="true" />
+                        <param name="keep_unmerged" value="Yes" />
                     </conditional>
                 </conditional>
                 <param name="min_amplicon_size" value="44" />
                 <param name="max_amplicon_size" value="490" />
-                <conditional name="sequencing_protocol">
-                    <param name="sequencing_protocol_selected" value="standard" />
+                  <conditional name="is_primer_in_seq">
+                    <param name="primer_choice" value="true" />
                     <param name="five_prim_primer" value="GGCGVACGGGTGAGTAA" />
                     <param name="three_prim_primer" value="GTGCCAGCNGCNGCGG" />
                 </conditional>
@@ -335,13 +335,13 @@
                         <conditional name="merge_software_type">
                             <param name="merge_software" value="vsearch" />
                         </conditional>
-                        <param name="keep_unmerged" value="true" />
+                        <param name="keep_unmerged" value="Yes" />
                     </conditional>
                 </conditional>
                 <param name="min_amplicon_size" value="44" />
                 <param name="max_amplicon_size" value="490" />
-                <conditional name="sequencing_protocol">
-                    <param name="sequencing_protocol_selected" value="standard" />
+                <conditional name="is_primer_in_seq">
+                    <param name="primer_choice" value="true" />
                     <param name="five_prim_primer" value="GGCGVACGGGTGAGTAA" />
                     <param name="three_prim_primer" value="GTGCCAGCNGCNGCGG" />
                 </conditional>