# HG changeset patch
# User iuc
# Date 1643096995 0
# Node ID 9ee3f57922edf1c6abe03a7637d9bbeca686ae11
# Parent  dddf083b8f5ae29d568d4010a1bc909e1a1eb149
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 2609367ebbce7e0c3f5b4b2d7c60a82d4bd03246"

diff -r dddf083b8f5a -r 9ee3f57922ed spades.xml
--- a/spades.xml	Mon Jan 24 18:37:37 2022 +0000
+++ b/spades.xml	Tue Jan 25 07:49:55 2022 +0000
@@ -308,12 +308,12 @@
             <output_collection name="out_cr" type="list" count="3">
                 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
@@ -340,12 +340,12 @@
             <output_collection name="out_cr" type="list" count="3">
                 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
@@ -404,12 +404,12 @@
             <output_collection name="out_cr" type="list" count="3">
                 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
@@ -436,12 +436,12 @@
             <output_collection name="out_cr" type="list" count="3">
                 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
                     <assert_contents>
-                        <has_size value="130317" delta="1000"/>
+                        <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
                 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
diff -r dddf083b8f5a -r 9ee3f57922ed write_tsv_script.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/write_tsv_script.py	Tue Jan 25 07:49:55 2022 +0000
@@ -0,0 +1,16 @@
+#!/usr/bin/env python
+
+import re
+import sys
+
+search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$"
+
+replace_str = r"\1_\2\t\3\t\4"
+
+cmd = re.compile(search_str)
+
+sys.stdout.write("#name\tlength\tcoverage\n")
+
+for i, line in enumerate(sys.stdin):
+    if cmd.match(line):
+        sys.stdout.write(cmd.sub(replace_str, line))