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planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
author nml
date Fri, 20 Dec 2024 18:33:49 +0000
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1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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1 # SISTR - Salmonella In Silico Typing Resource (SISTR) commandline tool
1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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3 `SISTR` is a standalone serotyping module for *Salmonella* typing. The tool supports assembled genomes.
1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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5 This Galaxy wrapper makes this tool accessible via Galaxy Project server and allows integration into workflows. Galaxy workflows include assembly and reporting steps for large sample sizes and are available to be installed from the main repository at <https://github.com/phac-nml/sistr_cmd>
1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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7 The tool can also be accessed via public instance at Galaxy EU at <https://usegalaxy.eu/root?tool_id=sistr_cmd>
1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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9 # Citation
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10 If you find this tool useful, please cite as
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1f6159dc3598 planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
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12 ><cite> The *Salmonella In Silico* Typing Resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft *Salmonella* genome assemblies. Catherine Yoshida, Peter Kruczkiewicz, Chad R. Laing, Erika J. Lingohr, Victor P.J. Gannon, John H.E. Nash, Eduardo N. Taboada. PLoS ONE 11(1): e0147101. doi: 10.1371/journal.pone.0147101 </cite>