Mercurial > repos > nml > mob_suite

annotate workflows/AMRworkflow_STARAMR.ga @ 1:ac93c8247a7f draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit bc53cd0c79b976fc17f854ede446e61d6c9bb49a
author nml
date Wed, 26 Feb 2025 15:14:34 +0000
parents f081459f2a15
children
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f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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1 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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2 "a_galaxy_workflow": "true",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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3 "annotation": "Mobilome and resistome analyses are valuable tools to better characterize genome assemblies for the presence of antibiotic resistance phenotypes and mobile elements such as plasmids. The location of the resistance (chromosome or plasmid) will provide information on potential dissemination potential of the antibiotic resistance genes via horizontal or clonal gene transfer mechanisms (available via the summary.tsv report). This draft workflow will help end-user to potentially qualitatively estimate potential AMR risk for a given isolate along with the underlying mechanisms and the epidemiology of antimicrobial resistance. \n\nPlease provide us with your feedback in order to improve usability and flexibility of the workflow. For more information refer to http://dx.doi.org/10.1099/mgen.0.000206 and https://github.com/phac-nml/staramr. \n\n",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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4 "format-version": "0.1",
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5 "name": "Mobilome and Resistome Analysis Workflow (MOB-Recon and STARAMR)",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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9 "content_id": "toolshed.g2.bx.psu.edu/repos/nml/mob_suite/mob_recon/1.4.8",
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10 "errors": null,
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11 "id": 0,
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12 "input_connections": {},
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13 "inputs": [
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14 {
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15 "description": "runtime parameter for tool MOB-Recon",
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16 "name": "input"
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17 }
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18 ],
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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19 "label": null,
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20 "name": "MOB-Recon",
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21 "outputs": [
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22 {
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23 "name": "seqhits",
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24 "type": "input"
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25 },
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26 {
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27 "name": "outfile1",
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28 "type": "tabular"
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29 },
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30 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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31 "name": "outfile2",
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32 "type": "tabular"
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33 },
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34 {
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35 "name": "outfile3",
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36 "type": "tabular"
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37 }
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38 ],
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39 "position": {
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40 "left": 200,
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41 "top": 200
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42 },
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43 "post_job_actions": {
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44 "HideDatasetActionoutfile1": {
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45 "action_arguments": {},
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46 "action_type": "HideDatasetAction",
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47 "output_name": "outfile1"
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48 },
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49 "HideDatasetActionoutfile2": {
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50 "action_arguments": {},
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51 "action_type": "HideDatasetAction",
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52 "output_name": "outfile2"
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53 },
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54 "HideDatasetActionoutfile3": {
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55 "action_arguments": {},
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56 "action_type": "HideDatasetAction",
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57 "output_name": "outfile3"
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58 }
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59 },
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60 "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/mob_suite/mob_recon/1.4.8",
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61 "tool_shed_repository": {
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62 "changeset_revision": "2c7f721a4905",
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63 "name": "mob_suite",
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64 "owner": "nml",
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65 "tool_shed": "toolshed.g2.bx.psu.edu"
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66 },
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67 "tool_state": "{\"adv_param\": \"{\\\"min_length_condition\\\": {\\\"min_length_param\\\": \\\"False\\\", \\\"__current_case__\\\": 1}, \\\"min_con_ident\\\": \\\"80\\\", \\\"min_mob_ident\\\": \\\"80\\\", \\\"min_mob_evalue\\\": \\\"1e-05\\\", \\\"min_rep_evalue\\\": \\\"1e-05\\\", \\\"unicycler_contigs\\\": \\\"True\\\", \\\"min_rep_ident\\\": \\\"80\\\", \\\"min_rpp_evalue\\\": \\\"1e-05\\\", \\\"min_rpp_ident\\\": \\\"80\\\", \\\"run_circlator\\\": \\\"True\\\", \\\"min_con_evalue\\\": \\\"1e-05\\\"}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__page__\": null}",
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68 "tool_version": "1.4.8",
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69 "type": "tool",
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70 "uuid": "017d5861-8836-46a8-8444-0dcaca60eda1",
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71 "workflow_outputs": [
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72 {
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73 "label": null,
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74 "output_name": "seqhits",
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75 "uuid": "6304bc2b-bcc9-47c4-8e3b-9d2ee5a80433"
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76 }
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77 ]
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78 },
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79 "1": {
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80 "annotation": "",
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81 "content_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.2",
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82 "errors": null,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
83 "id": 1,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
84 "input_connections": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
85 "genomes": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
86 "id": 0,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
87 "output_name": "seqhits"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
88 }
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
89 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
90 "inputs": [
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
91 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
92 "description": "runtime parameter for tool staramr",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
93 "name": "genomes"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
94 }
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
95 ],
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
96 "label": null,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
97 "name": "staramr",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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parents:
diff changeset
98 "outputs": [
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
99 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
100 "name": "blast_hits",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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parents:
diff changeset
101 "type": "input"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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102 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
103 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
104 "name": "summary",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
105 "type": "tabular"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
106 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
107 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
108 "name": "resfinder",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
109 "type": "tabular"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
110 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
111 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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parents:
diff changeset
112 "name": "pointfinder",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
113 "type": "tabular"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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114 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
115 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
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116 "name": "settings",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
117 "type": "txt"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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118 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
119 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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120 "name": "excel",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
121 "type": "xlsx"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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122 }
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
123 ],
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
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124 "position": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
125 "left": 420,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
126 "top": 200
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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127 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
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128 "post_job_actions": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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parents:
diff changeset
129 "HideDatasetActionpointfinder": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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130 "action_arguments": {},
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
131 "action_type": "HideDatasetAction",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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132 "output_name": "pointfinder"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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133 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
134 "HideDatasetActionsettings": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
135 "action_arguments": {},
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
136 "action_type": "HideDatasetAction",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
137 "output_name": "settings"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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138 }
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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139 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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140 "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.2",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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parents:
diff changeset
141 "tool_shed_repository": {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
142 "changeset_revision": "9047a1d3d8ea",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
143 "name": "staramr",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
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144 "owner": "nml",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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145 "tool_shed": "toolshed.g2.bx.psu.edu"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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146 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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147 "tool_state": "{\"__page__\": null, \"use_pointfinder\": \"{\\\"enable\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"genomes\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"chromInfo\": \"\\\"/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"advanced\": \"{\\\"pid_threshold\\\": \\\"98.0\\\", \\\"exclude_resistance_phenotypes\\\": \\\"false\\\", \\\"exclude_negatives\\\": \\\"false\\\", \\\"plength_resfinder\\\": \\\"60.0\\\", \\\"plength_pointfinder\\\": \\\"95.0\\\", \\\"report_all_blast\\\": \\\"false\\\"}\"}",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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148 "tool_version": "0.2.2",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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149 "type": "tool",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
150 "uuid": "41f8718f-87a0-45d2-b79d-e5afddea1532",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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151 "workflow_outputs": [
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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152 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
153 "label": null,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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154 "output_name": "blast_hits",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
155 "uuid": "9e8592ad-71c0-4528-8e8b-efcd3bb9183a"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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156 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
157 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
158 "label": null,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
159 "output_name": "resfinder",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
160 "uuid": "2f27a46b-29bf-4abf-9d26-fce4e9fc9dd5"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
161 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
162 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
163 "label": null,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
164 "output_name": "excel",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
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diff changeset
165 "uuid": "67549d0b-0480-4c25-8bfd-1fa78cfdb066"
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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166 },
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
167 {
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
nml
parents:
diff changeset
168 "label": null,
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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diff changeset
169 "output_name": "summary",
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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170 "uuid": "17c9e48c-234a-4cb7-986d-f88166bfe0a7"
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171 }
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172 ]
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173 }
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174 },
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175 "tags": [
f081459f2a15 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite commit 8bd2d0ff4101e7e7e6a45247d616929593a03cd4
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176 "AMR",
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177 "Resistance",
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178 "ResFinder",
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179 "StarAMR",
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180 "MOB-Suite",
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181 "ARGs"
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182 ],
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183 "uuid": "d6ce87c0-2d16-4c8c-bea8-6464264565d4"
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184 }