# HG changeset patch # User nilesh # Date 1373908177 18000 # Node ID 0f95d40cb684a86ceca2357024a1b3dd9b2991f1 # Parent 9e66123d34e85d7b4558f9f9fe7ae849dd760fb8 first commit diff -r 9e66123d34e8 -r 0f95d40cb684 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jul 15 12:09:37 2013 -0500 @@ -0,0 +1,25 @@ + + + + + + http://zlib.net/zlib-1.2.8.tar.gz + ./configure --prefix=$INSTALL_DIR/zlib + make + make install prefix=$INSTALL_DIR/zlib + git clone https://github.com/najoshi/sickle.git + cd ./sickle && make LIBS="-L$INSTALL_DIR/zlib/lib -lz" + + sickle/sickle + $INSTALL_DIR/bin + + + $INSTALL_DIR/bin + + + + + Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. + + +