Mercurial > repos > nilesh > rseqc

diff read_hexamer.xml @ 13:a7f9084572fe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:21:47 +0000
parents 57fad5deeb8e
children
line wrap: on
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--- a/read_hexamer.xml	Sat Dec 18 19:40:16 2021 +0000
+++ b/read_hexamer.xml	Sat Dec 10 11:21:47 2022 +0000
@@ -1,12 +1,11 @@
-<tool id="rseqc_read_hexamer" name="Hexamer frequency" version="@TOOL_VERSION@">
+<tool id="rseqc_read_hexamer" name="Hexamer frequency" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
     <description>
         calculates hexamer (6mer) frequency for reads, genomes, and mRNA sequences
     </description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>rseqc_macros.xml</import>
     </macros>
-
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
 
     <expand macro="stdio" />
@@ -57,7 +56,7 @@
             <output name="output">
                 <assert_contents>
                     <has_line line="Hexamer&#009;pairend_strandspecific_51mer_hg19_chr1_1-100000_R1_fastq" />
-                    <has_line line="AAAAAA&#009;0.00217391304348" />
+                    <has_text text="0.002173913043478261" />
                 </assert_contents>
             </output>
         </test>
@@ -66,7 +65,7 @@
             <output name="output">
                 <assert_contents>
                     <has_line line="Hexamer&#009;pairend_strandspecific_51mer_hg19_chr1_1-100000_R1_fastq_gz" />
-                    <has_line line="AAAAAA&#009;0.00217391304348" />
+                    <has_text text="0.002173913043478261" />
                 </assert_contents>
             </output>
         </test>
@@ -75,7 +74,7 @@
             <output name="output">
                 <assert_contents>
                     <has_line line="Hexamer&#009;pairend_strandspecific_51mer_hg19_chr1_1-100000_R1_fastq&#009;pairend_strandspecific_51mer_hg19_chr1_1-100000_R2_fastq" />
-                    <has_line line="AAAAAA&#009;0.00217391304348&#009;0.00534759358289" />
+                    <has_text text="0.002173913043478261" />
                 </assert_contents>
             </output>
         </test>
@@ -84,7 +83,7 @@
             <output name="output">
                 <assert_contents>
                     <has_line line="Hexamer&#009;pairend_strandspecific_51mer_hg19_chr1_1-100000_R1_fastq&#009;pairend_strandspecific_51mer_hg19_chr1_1-100000_R1_fastq.1" />
-                    <has_line line="AAAAAA&#009;0.00217391304348&#009;0.00217391304348" />
+                    <has_text text="0.002173913043478261" />
                 </assert_contents>
             </output>
         </test>