Mercurial > repos > nilesh > rseqc
diff geneBody_coverage.xml @ 12:57fad5deeb8e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author | iuc |
---|---|
date | Sat, 18 Dec 2021 19:40:16 +0000 |
parents | d7f6b3653d84 |
children | a7f9084572fe |
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--- a/geneBody_coverage.xml Wed Sep 01 08:21:45 2021 +0000 +++ b/geneBody_coverage.xml Sat Dec 18 19:40:16 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="rseqc_geneBody_coverage" name="Gene Body Coverage (BAM)" version="@WRAPPER_VERSION@.3"> +<tool id="rseqc_geneBody_coverage" name="Gene Body Coverage (BAM)" version="@TOOL_VERSION@.3"> <description>Read coverage over gene body</description> <expand macro="bio_tools"/> <macros> @@ -68,7 +68,7 @@ <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" /> <param name="rscript_output" value="true" /> <output name="outputcurvespdf" file="output.geneBodyCoverage.curves.pdf" compare="sim_size" /> - <output name="outputr" file="output.geneBodyCoverage.r" /> + <output name="outputr" file="output.geneBodyCoverage_r" /> <output name="outputtxt" file="output.geneBodyCoverage.txt" /> </test> <test> @@ -76,11 +76,11 @@ <param name="batch_mode_selector" value="merge" /> <param name="inputs" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam,pairend_strandspecific_51mer_hg19_chr1_1-100000.bam,pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> </conditional> - <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" /> + <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> <param name="rscript_output" value="true" /> <output name="outputcurvespdf" file="output2.geneBodyCoverage.curves.pdf" compare="sim_size" /> <output name="outputheatmappdf" file="output2.geneBodyCoverage.heatMap.pdf" compare="sim_size" /> - <output name="outputr" file="output2.geneBodyCoverage.r" /> + <output name="outputr" file="output2.geneBodyCoverage_r" /> <output name="outputtxt" file="output2.geneBodyCoverage.txt" /> </test>