Mercurial > repos > nilesh > rseqc

comparison rseqc_macros.xml @ 6:017eaaf58e5e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 62a9135bf04aec398d3172d17ccd60f5242d8e82
author iuc
date Wed, 13 Jun 2018 18:02:09 -0400
parents caaa120457bc
children d7f6b3653d84
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5:09a89ed6f8fd 6:017eaaf58e5e
24 <xml name="bam_sam_param"> 24 <xml name="bam_sam_param">
25 <param name="input" type="data" label="Input .bam/.sam file" format="bam,sam" help="(--input-file)"/> 25 <param name="input" type="data" label="Input .bam/.sam file" format="bam,sam" help="(--input-file)"/>
26 </xml> 26 </xml>
27 27
28 <xml name="refgene_param"> 28 <xml name="refgene_param">
29 <param name="refgene" type="data" format="bed" label="Reference gene model" help="(--refgene)"/> 29 <param name="refgene" type="data" format="bed12" label="Reference gene model" help="(--refgene)"/>
30 </xml> 30 </xml>
31 31
32 <xml name="mapq_param"> 32 <xml name="mapq_param">
33 <param name="mapq" type="integer" label="Minimum mapping quality" value="30" help="Minimum mapping quality for an alignment to be considered as &quot;uniquely mapped&quot; (--mapq)"/> 33 <param name="mapq" type="integer" label="Minimum mapping quality" value="30" help="Minimum mapping quality for an alignment to be considered as &quot;uniquely mapped&quot; (--mapq)"/>
34 </xml> 34 </xml>