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comparison RNASeQC.xml @ 4:d58aa04f7ad6

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added zlib dependency
author nilesh
date Mon, 15 Jul 2013 13:36:57 -0500
parents 5b955fc765a3
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3:5b955fc765a3 4:d58aa04f7ad6
1 <tool id="RNASeQC" name="RNASeQC"> 1 <tool id="RNASeQC" name="RNASeQC">
2 <description>RNASeQC: Quality control metrics for RNA-seq data</description> 2 <description>RNASeQC: Quality control metrics for RNA-seq data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.8">zlib</requirement>
4 <requirement type="package" version="0.6.2">bwa</requirement> 5 <requirement type="package" version="0.6.2">bwa</requirement>
5 <requirement type="set_environment">RNASEQCPATH</requirement> 6 <requirement type="set_environment">RNASEQCPATH</requirement>
6 </requirements> 7 </requirements>
7 <command interpreter="java"> 8 <command interpreter="java">
8 -jar \$RNASEQCPATH/RNASeQC.jar -r $input1 -t $input2 -s "SampleID|$input3|Notes" -o output 9 -jar \$RNASEQCPATH/RNASeQC.jar -r $input1 -t $input2 -s "SampleID|$input3|Notes" -o output