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view tool_dependencies.xml @ 12:57823dcd0795 draft

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author nikos
date Tue, 09 Sep 2014 08:52:49 -0400
parents ad32956798e3
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bigWigSummary" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bigWigSummary</action>
	        <action type="move_directory_files">
        	    <source_directory>.</source_directory>
        	    <destination_directory>$INSTALL_DIR</destination_directory>
        	</action>
                <action type="chmod"><file mode="755">$INSTALL_DIR/bigWigSummary</file></action>
		<action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
	    </actions>
        </install>
        <readme>
        </readme>
    </package>
    <package name="bedClip" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedClip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="chmod"><file mode="755">$INSTALL_DIR/bedClip</file></action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
    <package name="bedExtendRanges" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedExtendRanges</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="chmod"><file mode="755">$INSTALL_DIR/bedExtendRanges</file></action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
    <package name="faCount" version="1.0">
	<install version="1.0">
	    <actions>
		<action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faCount</action>
		<action type="move_directory_files">
		    <source_directory>.</source_directory>
		    <destination_directory>$INSTALL_DIR</destination_directory>
	        </action>
		<action type="chmod"><file mode="755">$INSTALL_DIR/faCount</file></action>
		<action type="set_environment">
		     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
	    </actions>
	</install>
	<readme>
	</readme>
    </package>
    <package name="fetchChromSizes" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
		<action type="chmod"><file mode="755">$INSTALL_DIR/fetchChromSizes</file></action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>