Mercurial > repos > nikos > rna_probing

diff tool_dependencies.xml @ 24:431aebd93843 draft default tip

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Fixed a bug in k2n.R where the function k2n_calc() would result in an error for single-end read files.
author nikos
date Wed, 05 Aug 2015 09:21:02 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Aug 05 09:21:02 2015 -0400
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gnu_awk" version="4.1.0">
+        <repository changeset_revision="cbe9f1c8c98b" name="package_gnu_awk_4_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="samtools" version="0.1.19">
+        <repository changeset_revision="632f1a03db92" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="R_3_1_1" version="3.1.1">
+        <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="RNAprobR" version="1.0.0">
+        <repository changeset_revision="4b06a295c27e" name="package_rna_probing_0_99_0" owner="nikos" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="RNA_PROBING_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+</tool_dependency>