view tool_dependencies.xml @ 1:a1d99b0d4131 draft

Added getopts package tarball.

<?xml version="1.0"?>
<tool_dependency>
    <package name="R_3_1_1" version="3.1.1">
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    </package>

    <package name="RNAprobR" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
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                    </repository>
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                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/plyr_1.8.1.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BiocGenerics_0.12.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/Biobase_2.26.0.tar.gz</package>
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                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/IRanges_2.0.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomeInfoDb_1.2.2.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/XVector_0.6.0.tar.gz</package>
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                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/RSQLite_1.0.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/AnnotationDbi_1.28.1.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/zlibbioc_1.12.0.tar.gz</package>
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                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/bitops_1.0-6.tar.gz</package>
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                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/foreach_1.4.2.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/brew_1.0-6.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/checkmate_1.5.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/digest_0.6.4.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BBmisc_1.8.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/fail_1.2.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/stringr_0.6.2.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/base64enc_0.1-2.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/sendmailR_1.2-1.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BatchJobs_1.5.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BiocParallel_1.0.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomicAlignments_1.2.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/rtracklayer_1.26.1.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/biomaRt_2.22.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomicFeatures_1.18.2.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/RNAprobR_0.99.0.tar.gz</package>
                    <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/getopt_1.20.0.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme>
            RNA probing data Analysis suite
            Link to Bioconductor when the package gets approved.
            Link to chapter here..
        </readme>
    </package>
</tool_dependency>