# HG changeset patch # User nikos # Date 1406730887 14400 # Node ID 52f48427f2a4453f4df785fbbbd62af6a69dd6e8 # Parent 049625551a0ffcae40f6ac73b76f95f1899d8452 Deleted selected files diff -r 049625551a0f -r 52f48427f2a4 bigwig_to_wig.xml --- a/bigwig_to_wig.xml Wed Jul 30 10:33:00 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,576 +0,0 @@ - - - - - - - - - - - - - galaxytools/bigwig_to_wig/bigwig_to_wig.xml at master · sidiropoulos/galaxytools · GitHub - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Skip to content -
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- galaxytools / bigwig_to_wig / bigwig_to_wig.xml -
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- bigWig to Wig converter. -
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<tool id="bigwig_to_wig" name="BigWig to Wig" version="1.0.0">
  <description>converter</description>
  <command>/home/jens/bin/bigwig2wig_stdout -f $input -b $bin_size -l $mylab > $output 
  </command>
  <requirements>
    <requirement type="package">bigWigSummary</requirement>
    <requirement type="package">bigwig2wig</requirement>
    <requirement type="package">bigWigInfo</requirement>
  </requirements>
  <inputs>
    <param format="bigwig" name="input" type="data" label="BigWig file to convert">
    </param>
    <param name="bin_size" size="4" type="integer" value="500" label="Bin size" help="Must be an even integer > 100." />
    <param name="mylab" type="text" value="wiggle_file" label="Output file prefix" help="" />
  </inputs>
  <outputs>
    <data format="wig" name="output" label="${mylab}_density_bin${bin_size}.wig" />
  </outputs>
  <tests>
  </tests>
  <help>

This tool converts a **BigWig** file to fixed step **Wiggle** format. 
Resolution is controlled through the bin size (the higher the size, the lower the resolution).

The script this tool is based on is written by Jens Vilstrup Johansen and uses bigWigInfo_ and bigWigSummary_.

.. _bigWigInfo: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigInfo
.. _bigWigSummary: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigSummary

</help>
</tool>
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