Mercurial > repos > nick > minor_variant_boxplot
changeset 7:a777a76205cc draft default tip
Current version - documentation and suppressing error on stderr messages
| author | nick |
|---|---|
| date | Tue, 04 Jun 2013 00:07:06 -0400 |
| parents | 99cda2ff12b8 |
| children | |
| files | hetbox.xml |
| diffstat | 1 files changed, 12 insertions(+), 2 deletions(-) [+] |
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--- a/hetbox.xml Tue Jun 04 00:06:36 2013 -0400 +++ b/hetbox.xml Tue Jun 04 00:07:06 2013 -0400 @@ -4,7 +4,7 @@ </command> <inputs> <param name="input" type="data" format="tabular" label="Input allele counts"/> - <param name="report" type="boolean" truevalue="yes" falsevalue="no" checked="True label="Also produce a text report" /> + <param name="report" type="boolean" truevalue="yes" falsevalue="no" checked="True" label="Also produce a text report" /> </inputs> <outputs> <data name="outplot" format="png"/> @@ -12,6 +12,10 @@ <filter>report is True</filter> </data> </outputs> + <stdio> + <exit_code range="1:" err_level="fatal"/> + <exit_code range=":-1" err_level="fatal"/> + </stdio> <help> @@ -19,7 +23,13 @@ **What it does** -This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers. +This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a text report with these numbers. + +.. class:: infomark + +**The boxplot** + +The graphic shows the distribution of the minor allele frequencies as a boxplot per sample. At the bottom of each plot, a count (N) is given of the number of minor alleles in the plot. </help>