Mercurial > repos > nick > minor_variant_boxplot

<tool id="hetbox" version="1.0" name="Minor variant boxplot">
  <description> from allele counts</description>
  <command interpreter="python">hetbox.py $input $outplot $outreport $report</command>
  <inputs>
    <param name="input" type="data" format="tabular" label="Input allele counts"/>
    <param name="report" type="boolean" truevalue="-r" falsevalue="" checked="False" label="Also produce a text report" />
  </inputs>
  <outputs>
    <data name="outplot" format="png"/>
    <data name="outreport" format="tabular"/>
  </outputs>

  <help>

.. class:: infomark

**What it does**

    This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers.

  </help>

  <requirements>
    <requirement type="package" version="1.7.1">numpy</requirement>
  </requirements>
</tool>
author	nick
date	Thu, 30 May 2013 15:41:27 -0400
parents	e9c34ef993d6
children	d38113d9c4d6