# HG changeset patch
# User nick
# Date 1487411798 18000
# Node ID 71b765a4c494969175a64b9d82656a42f83475df
# Parent  f33b89fe9f82a0b08d9979f155f4e240dbc195e3
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'53eba8ce731a5f8afd739f9b9c01229b54880e6c\n'-dirty

diff -r f33b89fe9f82 -r 71b765a4c494 align_families.xml
--- a/align_families.xml	Sat Feb 18 04:10:19 2017 -0500
+++ b/align_families.xml	Sat Feb 18 04:56:38 2017 -0500
@@ -3,7 +3,7 @@
   <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="7.221">mafft</requirement>
-    <requirement type="package" version="0.6.1">duplex</requirement>
+    <requirement type="package" version="0.6.2">duplex</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code">align_families.py -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
diff -r f33b89fe9f82 -r 71b765a4c494 correct_barcodes.xml
--- a/correct_barcodes.xml	Sat Feb 18 04:10:19 2017 -0500
+++ b/correct_barcodes.xml	Sat Feb 18 04:56:38 2017 -0500
@@ -5,7 +5,7 @@
     <requirement type="package" version="2.1.0">bowtie2</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
     <requirement type="package" version="1.9">networkx</requirement>
-    <requirement type="package" version="0.6.1">duplex</requirement>
+    <requirement type="package" version="0.6.2">duplex</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code">correct-barcodes.sh -d $dist -m $mapq -p $pos '$input' &gt; '$output'
diff -r f33b89fe9f82 -r 71b765a4c494 dunovo.xml
--- a/dunovo.xml	Sat Feb 18 04:10:19 2017 -0500
+++ b/dunovo.xml	Sat Feb 18 04:56:38 2017 -0500
@@ -2,7 +2,7 @@
 <tool id="duplex" name="Du Novo: Make consensus reads" version="0.6">
   <description>from duplex sequencing alignments</description>
   <requirements>
-    <requirement type="package" version="0.6.1">duplex</requirement>
+    <requirement type="package" version="0.6.2">duplex</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code">dunovo.sh -r $min_reads -q $qual_thres -F $qual_format '$input' '$dcs1' '$dcs2'
diff -r f33b89fe9f82 -r 71b765a4c494 make_families.xml
--- a/make_families.xml	Sat Feb 18 04:10:19 2017 -0500
+++ b/make_families.xml	Sat Feb 18 04:56:38 2017 -0500
@@ -2,10 +2,10 @@
 <tool id="make_families" name="Du Novo: Make families" version="0.6">
   <description>of duplex sequencing reads</description>
   <requirements>
-    <requirement type="package" version="0.6.1">duplex</requirement>
+    <requirement type="package" version="0.6.2">duplex</requirement>
   </requirements>
   <!-- TODO: Add dependency on coreutils to get paste? -->
-  <command detect_errors="exit_code">make-families.sh -v TAG_LEN=$taglen -v INVARIANT=$invariant '$fastq1' '$fastq2' &gt; '$output'
+  <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
   </command>
   <inputs>
     <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
diff -r f33b89fe9f82 -r 71b765a4c494 tool_dependencies.xml
--- a/tool_dependencies.xml	Sat Feb 18 04:10:19 2017 -0500
+++ b/tool_dependencies.xml	Sat Feb 18 04:56:38 2017 -0500
@@ -12,10 +12,10 @@
   <package name="networkx" version="1.9">
     <repository changeset_revision="2ca57555a756" name="package_networkx_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-  <package name="duplex" version="0.6.1">
+  <package name="duplex" version="0.6.2">
     <install version="1.0">
       <actions>
-        <action sha256sum="f4ee6ef4db6b97bd96bcfb79b18b2ed87b933c8bbbc26073390597da84683ee0" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.6.1.tar.gz</action>
+        <action sha256sum="04cb2646b5b451add8bf39d1d458e178b16318fe2a9f4958a7fe5c00a6d9a354" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.6.2.tar.gz</action>
         <action type="shell_command">make</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>