Mercurial > repos > nick > duplex
diff duplex.sublime-workspace @ 4:af383638de66 draft
planemo upload commit 022984f323d3da44f70b3bf79c684cfd8dda3f61-dirty
| author | nick |
|---|---|
| date | Mon, 23 Nov 2015 18:44:23 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/duplex.sublime-workspace Mon Nov 23 18:44:23 2015 -0500 @@ -0,0 +1,1134 @@ +{ + "auto_complete": + { + "selected_items": + [ + [ + "can", + "can_change_color function" + ], + [ + "NAI", + "NAIVE_TEST_THRES" + ], + [ + "curre", + "current_seq statement" + ], + [ + "align", + "align_path statement" + ], + [ + "Att", + "AttributeError class" + ], + [ + "pipe", + "pipeline_family_choose_asm function" + ], + [ + "Obj", + "ObjectsById" + ], + [ + "get", + "getElementById" + ], + [ + "make", + "makeStatElem" + ], + [ + "timeTo", + "timeToNextReindeer" + ], + [ + "golden", + "goldenUpgrades" + ], + [ + "How", + "HowMuchPrestige" + ], + [ + "HTTP", + "HTTPLIB_PARAMS statement" + ], + [ + "ISNV", + "ISNVFILE_DEFAULT statement" + ], + [ + "DA", + "DATA_DIR_DEFAULT statement" + ], + [ + "REQ", + "REQUIRED_PICARDS statement" + ], + [ + "add_ar", + "add_argument_group function" + ], + [ + "sample_fam", + "sample_family_rows statement" + ], + [ + "SAM", + "SAMPLES_FILE statement" + ], + [ + "spi", + "spikein_str statement" + ], + [ + "scri", + "scriptdir" + ], + [ + "IGNO", + "IGNORE_EXTS statement" + ], + [ + "watch", + "watch_progs" + ], + [ + "IG", + "IGNORE_EXTS statement" + ], + [ + "Dev", + "DeviceDefault" + ], + [ + "cac", + "cache_file" + ], + [ + "Asn", + "AsnMacCache" + ], + [ + "gate", + "gateway_ip" + ], + [ + "getE", + "getElementsByClassName" + ], + [ + "high", + "highlightTerms" + ], + [ + "medi", + "mediaElement" + ], + [ + "get_mp", + "get_mp3_name" + ], + [ + "pl", + "player_url" + ], + [ + "fa", + "fastq1" + ], + [ + "ba", + "backgrounded" + ], + [ + "human", + "human_time statement" + ], + [ + "NotI", + "NotImplementedError class" + ], + [ + "recu", + "recursively" + ], + [ + "SAMPLES", + "SAMPLES_HEADER statement" + ], + [ + "wildcard", + "wildcard_match function" + ], + [ + "existing", + "existing_samples statement" + ], + [ + "SAPL", + "SAMPLES_HEADER statement" + ], + [ + "max", + "max_tz_diff" + ], + [ + "bio", + "bio_sample_id statement" + ], + [ + "tech", + "technology" + ], + [ + "HEA", + "HEADER_JOINED statement" + ], + [ + "Z_B", + "Z_BORDER" + ], + [ + "BA", + "BASE_SIZE" + ], + [ + "destroy", + "destroyRecursive" + ], + [ + "sam", + "sample_regex" + ], + [ + "pair", + "pair_regex" + ], + [ + "edge", + "edge_effect" + ], + [ + "XRA", + "XRANDR_DISP_REGEX" + ], + [ + "eh", + "exho" + ], + [ + "MIN", + "MINUS2_SRC" + ], + [ + "filename", + "filename_new" + ], + [ + "MUL", + "MULTI_REPLACE" + ], + [ + "IMG", + "REGEX_IMGUR_SRC" + ], + [ + "lan_", + "lan_ip_current" + ], + [ + "BUFF", + "BUFFER_MAX" + ], + [ + "passed", + "passed_filters" + ], + [ + "getCo", + "getCoverageGap" + ], + [ + "GAME_", + "GAME_WIDTH" + ], + [ + "GAME", + "GAME_WIDTH" + ], + [ + "visi", + "visibility" + ], + [ + "source", + "source_file" + ], + [ + "like", + "likeliest_count" + ], + [ + "cso", + "csource_path_fixed" + ], + [ + "csou", + "csource_path" + ], + [ + "csour", + "csource_file" + ], + [ + "buffe", + "buffer_size" + ], + [ + "POP", + "POP_SIZE_MAX" + ], + [ + "B", + "BASE" + ], + [ + "fill", + "fill_test_data" + ], + [ + "binom", + "binomial_coefficient" + ], + [ + "alig", + "alignment1" + ], + [ + "ali", + "alignment2" + ], + [ + "choose", + "choose_sequence" + ], + [ + "back", + "background-color" + ], + [ + "perce", + "percent-decode" + ], + [ + "redir", + "redirect_url" + ], + [ + "redi", + "redirect_url" + ], + [ + "FAS", + "FASTA_WIDTH" + ], + [ + "new", + "new_chrom" + ], + [ + "rig", + "right_block" + ], + [ + "USE", + "USER_AGENT_BROWSER" + ], + [ + "query", + "query_interval" + ], + [ + "next", + "next_interval" + ], + [ + "final", + "final_sequence" + ], + [ + "subje", + "subject_name" + ], + [ + "summary", + "summary_fxn" + ], + [ + "summ", + "summary_fxn" + ], + [ + "D", + "DISTRIB_ID" + ], + [ + "DEF", + "DEFAULT_SIZE" + ], + [ + "state", + "state_filepath" + ], + [ + "data", + "data_filepath" + ], + [ + "des", + "desktop_size" + ], + [ + "matpl", + "matplotliblib" + ], + [ + "fig", + "figsize_ratio" + ], + [ + "search", + "search_windows" + ] + ] + }, + "buffers": + [ + { + "file": "/home/me/bx/project/ebola/compare/vcf-vs-tsv.py", + "settings": + { + "buffer_size": 5574, + "line_ending": "Unix" + } + }, + { + "file": "sscs.py", + "settings": + { + "buffer_size": 11029, + "line_ending": "Unix" + } + }, + { + "file": "stats.py", + "settings": + { + "buffer_size": 3713, + "line_ending": "Unix" + } + }, + { + "file": "/home/me/bx/code/duplex/align.c", + "settings": + { + "buffer_size": 7383, + "line_ending": "Unix" + } + }, + { + "file": "pipeline.sh", + "settings": + { + "buffer_size": 2314, + "line_ending": "Unix" + } + } + ], + "build_system": "", + "build_system_choices": + [ + ], + "build_varint": "", + "command_palette": + { + "height": 392.0, + "last_filter": "", + "selected_items": + [ + [ + "folder", + "Project: Add Folder" + ], + [ + "ana", + "Anaconda: Next lint error" + ], + [ + "js", + "JSHint" + ], + [ + "install package", + "Package Control: Install Package" + ], + [ + "disp", + "Anaconda: Display object docs" + ], + [ + "goto", + "Anaconda: Goto object definition" + ], + [ + "", + "Anaconda: McCabe complexity check" + ], + [ + "package", + "Package Control: Install Package" + ], + [ + "jshint", + "JSHint: Set Linting Preferences" + ] + ], + "width": 530.0 + }, + "console": + { + "height": 126.0, + "history": + [ + "import urllib.request,os,hashlib; h = '7183a2d3e96f11eeadd761d777e62404' + 'e330c659d4bb41d3bdf022e94cab3cd0'; pf = 'Package Control.sublime-package'; ipp = sublime.installed_packages_path(); urllib.request.install_opener( urllib.request.build_opener( urllib.request.ProxyHandler()) ); by = urllib.request.urlopen( 'http://sublime.wbond.net/' + pf.replace(' ', '%20')).read(); dh = hashlib.sha256(by).hexdigest(); print('Error validating download (got %s instead of %s), please try manual install' % (dh, h)) if dh != h else open(os.path.join( ipp, pf), 'wb' ).write(by)", + "sublime", + "print 1", + "type(None)", + "print None", + "None", + "a*3", + "if a:", + "if a: print \"a\"", + "a = 2", + "1", + "echo 1", + "print 1", + "1" + ] + }, + "distraction_free": + { + "menu_visible": true, + "show_minimap": false, + "show_open_files": false, + "show_tabs": false, + "side_bar_visible": false, + "status_bar_visible": false + }, + "expanded_folders": + [ + "/home/me/bx/code/duplex" + ], + "file_history": + [ + "/home/me/code/test.sublime-project", + "/home/me/annex/Work/PSU/Nekrutenko/code/indels/dev/group-filter.py", + "/home/me/bx/code/indels/dev/pipeline.py", + "/home/me/annex/Work/PSU/Nekrutenko/code/indels/dev/pipeline-families.sh", + "/home/me/annex/Work/PSU/Nekrutenko/code/heteroplasmy/pipeline-summary.sh", + "/home/me/annex/Work/PSU/Nekrutenko/code/indels/dev/pipeline-family.py", + "/home/me/annex/Work/PSU/Nekrutenko/code/heteroplasmy/pipeline-nvc-cvg.sh", + "/home/me/annex/Work/PSU/Nekrutenko/code/heteroplasmy/pipeline.sh", + 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