Mercurial > repos > nick > duplex
comparison correct_barcodes.xml @ 23:20d78baf0806 draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'3eab56b30cc9d644798a290017bcc1188f028af8\n'-dirty
| author | nick |
|---|---|
| date | Fri, 03 Feb 2017 15:54:34 -0500 |
| parents | 8ef925264516 |
| children | 736ead34b470 |
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| 22:8ef925264516 | 23:20d78baf0806 |
|---|---|
| 2 <tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.6"> | 2 <tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.6"> |
| 3 <description>of duplex sequencing reads</description> | 3 <description>of duplex sequencing reads</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.1.0">bowtie2</requirement> | 5 <requirement type="package" version="2.1.0">bowtie2</requirement> |
| 6 <requirement type="package" version="0.1.18">samtools</requirement> | 6 <requirement type="package" version="0.1.18">samtools</requirement> |
| 7 <requirement type="package" version="1.10">networkx</requirement> | |
| 7 <requirement type="package" version="0.6">duplex</requirement> | 8 <requirement type="package" version="0.6">duplex</requirement> |
| 8 <requirement type="set_environment">DUPLEX_DIR</requirement> | 9 <requirement type="set_environment">DUPLEX_DIR</requirement> |
| 9 <!-- TODO: require Python 2.7 --> | 10 <!-- TODO: require Python 2.7 --> |
| 10 </requirements> | 11 </requirements> |
| 11 <command detect_errors="exit_code">bash "\$DUPLEX_DIR/baralign.sh" '$input' refdir barcodes.bam | 12 <command detect_errors="exit_code">bash "\$DUPLEX_DIR/baralign.sh" '$input' refdir barcodes.bam |