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annotate misc/ACCGACACAGACTAGGGATCAAAG.msa.tsv @ 18:e4d75f9efb90 draft

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planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author nick
date Thu, 02 Feb 2017 18:44:31 -0500
parents af383638de66
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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af383638de66 planemo upload commit 022984f323d3da44f70b3bf79c684cfd8dda3f61-dirty
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1 >ab.1:
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2 AGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCTTTAGTGTTGTGTATGGTTATCATTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTT
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3 ......................................................................................................................................................................................................................................................T...............................G...G.
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4 .........................................................................................................................................................................................T.........................................................C.....T......................AT.T........
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5 .............................................................................................................................................................................................................................................................C......T.G......G..............
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6 .................................................................................................................................................................................C............................................................................A.......G.....................
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7 ...........................................C..................................................................................................................................................................................................C.............................................
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8 .........................................................................................................................................................................................................................................C..............A.......................A...T.......
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9 .........................................................................................................................C..................................................................G.....................................................T..........G......AC......C...AC..........
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10 .......................................................................................................................................................................................T.......C...........................................................................T.....GT.........
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11 .................C......................................................................................................................................................T.............................................................T..........C..A.T.......G..............GT.G..T.......G
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12 >ab.2:
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13 GGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTACCCCCTCTAGAGCCCACTCTAAAGCTAACTTAGCATTAACCTTTTCCGTTAACGTTTAAGCAAACCAACACCTCTCTACAGTGATATGCCCCAACCACATCCTACCGC
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14 ...........................................................................................................................................................T......T....T.................T..........C..C..........C........C.....C................C..........C.......C.CA........AC.........
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15 ...............................................G.........................................A.....A.............................A...........T.................T.................G..G.G..CACT.TAAAGCTAACTTCT.ATTAACCTTT.A.GA.AAAG.TTAAG.GAAC...CGCCT.T.TACAT.TAAATGCCAC.C..AATTACTA.CGGATGGC.AA.
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16 ............................................................................................................................................................................C..............T...................T.............AA......TA......G.............T....TC.TC..........T....AA.CA.AT
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17 ................................................................................................C..........................................................................T.T....................G.C.....C.....CA...........AA...T.A.A.A....G...T.......A.T..TCTC..A.....A....T....A..C.T.T
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18 .......................................................................................................................................A.........................A....CG.....A..........C.C.......G...C....C....T............A......ACAG..CTATC.........CTCT..AC..C.A.....A.T..T.....TACA.T.
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19 ..........................................................................................................................................................C..............................................C...................TAT....A.CA.C.AAG..A...TC.A...T....CAC.A...............A.......
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20 ..................................................................C............................................C.......................T.......C..........C....A....A.....................CT......G.C.C.A......C...........CA.AC.....AC.....AC..........C.......TCTCAT.A..A....AC...A.....AT
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21 ............................................................................................C.A...............................A.....C..C................C.......A.....T................CCCCC..AC......CA..C...CT..C......C...AA...C.TTA.CC.A..C.........C....C.CA.C.C..........ACA....ACA.C.
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22 ..................................................A....................................C.........A..C............A..............A...........T.G.A.A........A.C.......AC...A........A.....C.......CT..C..TC..T.A.....C..T.CC.CA......A.AC.CC.TG.C.G...CAT...T...TT.A.A..CA.A..CATCA.ATT...AC.
af383638de66 planemo upload commit 022984f323d3da44f70b3bf79c684cfd8dda3f61-dirty
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23 >ba.1:
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24 GGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGT
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25 .........................................................................................................................................................................................C....................................................C......................C..............C.......
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26 ................................................................................................................................................................................................................C.........................................A.......C.C..........C..C........C
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27 ............................................................................................T................................A...........C.......................T....C.................C............T............C.......................C..C.......T..A..........C............C....T....A.
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28 .........................................................................................................................................T...........A.....................A.......T.....AT.A...............T....................C........TA...........ACTG...A...A.C....AA.T..AT.TACA..A...
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29 ..........................................................................................................................C...........................................C..A.....C..T..C..C...........T...........C.....C....C.CCA...C.......C..C........................T..................AC
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30 ................................................................................................................................................................................................................A............................AC.A.......A.......A..C..............C......ACC
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31 ................................................................................................................................................................................A........C....................................CA.................A.............C.......TG...C.........C.T.C.
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32 ....................................................................................C.........G............................................................C..T.............A.....T......A.CA.A...T...........................C............C.C.CT.........A.....A.A.C...T...T....C........T.
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33 ......................................................................................................................................................................................................C...........................................................T......T......C.C..A......
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34 ...............................................................................................................................................................................C........C...........................................................................C.....................T.
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35 ...........................................................................................................................................................T..................C...........CA......C..................C.........T............CT..........A....C..CA.T.C.A...A......C...A.....
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36 .............................................................................................................................................T.C.....................................C...C.............A...C....C...C..............C.A....C...C....C........C..........C........CCC....C..CC
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37 .....................................................................................................................................................................C..................CA........C.C..........................................C...C.........C..T.......A........C........A.
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38 ...............................................................T.......................................................................................................A.........................................A......A.............C.......C..A.....A...A...........A...A.............A..
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39 ........................................................................................................................................................................................C.T....C.....................C...........C...........T...AC.A..............C...T.....CA..C..........
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40 ..............................................................................................................................................................................C.........C..C....................A.C.......C....A............C.......A...C...................................
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41 >ba.2:
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42 AGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCTTTAGTGTTGTGTATGGTTATCATTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGCATGAAGGGAACAGATTTTCGTTCATTTTGGTTCTGAGGGTTTGTTT
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43 ...........................................................................................................................................................C...................................C.....................C...TC...G.......................C......G....G...........A..........G..
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44 ..........................................................................................C............................................C.................................................C...............C.......................A.............GT.C.CTG......G.......G..........C.....G.....
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45 ......................................................................A.......................C......................C..........................................................G.T......T...................A..........T.....T.A............A.CTC..A..C.....G.G..AG.....CT.G..GAG..AC.C.A..
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46 ............................................................T..............................................................C.......................................................................C.....................T....C.C........C...G.C....C.......GCG.A.G.GC..........AT...A.....C
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47 .........T.................T....T.....................................................T...T............................................C....CT...............T.........C...G.......G.C...TG.....C..C.........T...T....T.T......G.............T....C.....G..G.GG.T..CGC.G.G.....GCT....G....G
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48 .........................................................................................................................................................................................................................A.C..C.........G....T......C.G.A.....G......C...G...GG...T...A....G
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49 .................................................................................................................................................................................C...........G.............................C..C.G.......G.G.........A.TG......G........G.CT.G...C...T.......
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50 ...C.....................................................T....................A........................T........................T.....................C..TT........T...A......G..T...A........................A....T.G........G.A....A.T.TC..AT.T.GTC.T..TAC..G.AT.CT....AT.G...AC........GC
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51 ...........................................................................................................................................................C.....................C.......C....................................CG..C....AG.C..G......C...TCTG.........C.....C.CT.C...TGC...CC
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52 ..........................................................................................................................................................................T................C.........A........T......G..AT.....G...A..T..G.G.....G..C.........G.T...G.........GG.GT..G.....G
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53 ....................C............C......................C.............................A.A.......GC...G....C.....G.................C..C................TG...C....C..........CA....T.C.T....C....C.GAT.....C........A.....TA....TG..AT..T.AC.G.A.....T..G....C....G...GTG.AC.TG.G..TT...C.A...
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54 .........C................................................................................G.....C...A......................................T..........G..T.TC.GG..T....T...C.GTT......TA..G.G.TC.....AT.....A..TG..AG...GTG..T....G......TG..G......A..GT.....G.T.G.G....G....A.T.T.TG......
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55 ................................................................................................C............................G.........T....................G......T....................................C...........CT..A..C......G......G...AG..T..C....C..G.......GC..G.....G.CGT..G......
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56 ..............................................T..............T...........A..G...........A.....A.G....A..................A........................G..G..G..........TC..A.....G...................................A..........T..G...........G..A...CG..T.CA..GGG......A.G.G...AG..TG.A.GC...GG
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57 .........................................................................................................................................................C...C.............CG...C..C.....G.TGC...........C...............A.C..C.G...C.....C..ATG....AC.C...............GA..A.GT.CT....G.....
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58 .........................................................................................................................................................................................................C...............A....G.G...T..TAC........C.A......G....G..A............CC..........