# HG changeset patch # User nick # Date 1487923385 18000 # Node ID 59f741c5a5f6666cb3fd93acbdb3f78a2058b880 # Parent e84c08637928ab47f5f9b11fea124b878bfd0838 planemo upload for repository https://github.com/galaxyproject/dunovo commit b'd25c300643f4f204b4a9445b8eac071b2d127520\n'-dirty diff -r e84c08637928 -r 59f741c5a5f6 align_families.xml --- a/align_families.xml Thu Feb 23 05:53:23 2017 -0500 +++ b/align_families.xml Fri Feb 24 03:03:05 2017 -0500 @@ -3,7 +3,7 @@ of duplex sequencing reads mafft - dunovo + dunovo align_families.py -p \${GALAXY_SLOTS:-1} '$input' > '$output' diff -r e84c08637928 -r 59f741c5a5f6 correct_barcodes.xml --- a/correct_barcodes.xml Thu Feb 23 05:53:23 2017 -0500 +++ b/correct_barcodes.xml Fri Feb 24 03:03:05 2017 -0500 @@ -5,7 +5,7 @@ bowtie2 samtools networkx - dunovo + dunovo correct-barcodes.sh -d $dist -m $mapq -p $pos '$input' > '$output' diff -r e84c08637928 -r 59f741c5a5f6 dunovo.xml --- a/dunovo.xml Thu Feb 23 05:53:23 2017 -0500 +++ b/dunovo.xml Fri Feb 24 03:03:05 2017 -0500 @@ -2,7 +2,7 @@ from duplex sequencing alignments - dunovo + dunovo dunovo.sh -r $min_reads -q $qual_thres -F $qual_format '$input' '$dcs1' '$dcs2' diff -r e84c08637928 -r 59f741c5a5f6 make_families.xml --- a/make_families.xml Thu Feb 23 05:53:23 2017 -0500 +++ b/make_families.xml Fri Feb 24 03:03:05 2017 -0500 @@ -2,7 +2,7 @@ of duplex sequencing reads - dunovo + dunovo make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' > '$output' diff -r e84c08637928 -r 59f741c5a5f6 tool_dependencies.xml --- a/tool_dependencies.xml Thu Feb 23 05:53:23 2017 -0500 +++ b/tool_dependencies.xml Fri Feb 24 03:03:05 2017 -0500 @@ -12,10 +12,10 @@ - + - https://github.com/galaxyproject/dunovo/archive/v0.7.tar.gz + https://github.com/galaxyproject/dunovo/archive/v0.7.1.tar.gz make .