# HG changeset patch
# User nick
# Date 1515139972 18000
# Node ID 04a9c9e8c8c386145fc2715a25505fdc3f18d290
# Parent  e875e557280890f10b0437855d601c779310b29e
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'fd1625359a101d8a6b0b8d97028cc8be509398f2\n'-dirty

diff -r e875e5572808 -r 04a9c9e8c8c3 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jan 05 00:50:23 2018 -0500
+++ b/tool_dependencies.xml	Fri Jan 05 03:12:52 2018 -0500
@@ -19,22 +19,22 @@
         <action type="download_file">https://github.com/NickSto/utillib/archive/v0.1.0.tar.gz</action>
         <action type="shell_command">tar -zxvpf v0.1.0.tar.gz</action>
         <action type="shell_command">rm v0.1.0.tar.gz</action>
-        <action type="shell_command">ls -lFhAb &gt; /home/me/tmp/galaxy/install.root1.log</action>
-        <action type="shell_command">ls -lFhAb utillib-0.1.0 &gt; /home/me/tmp/galaxy/install.utillib1.log</action>
+        <action type="shell_command">ls -lFhAb &gt; /home/me/tmp/galaxy/install.ls1.log</action>
+        <action type="shell_command">ls -lFhAb utillib-0.1.0 &gt; /home/me/tmp/galaxy/install.ls2.log</action>
+        <action type="shell_command">echo DEBUG $TMP_WORK_DIR</action>
         <action rename_to="utillib" type="move_file">
           <source>utillib-0.1.0</source>
-          <destination>.</destination>
+          <destination>$TMP_WORK_DIR</destination>
         </action>
-        <action type="shell_command">ls -lFhAb &gt; /home/me/tmp/galaxy/install.root2.log</action>
-        <action type="shell_command">ls -lFhAb utillib-0.1.0 &gt; /home/me/tmp/galaxy/install.utillib2.log</action>
-        <action type="shell_command">ls -lFhAb utillib &gt; /home/me/tmp/galaxy/install.utillib3.log</action>
+        <action type="shell_command">ls -lFhAb &gt; /home/me/tmp/galaxy/install.ls3.log</action>
+        <action type="shell_command">ls -lFhAb utillib &gt; /home/me/tmp/galaxy/install.ls4.log</action>
         <!-- download the kalign submodule -->
         <action type="download_file">https://github.com/makrutenko/kalign-dunovo/archive/v0.2.0.tar.gz</action>
         <action type="shell_command">tar -zxvpf v0.2.0.tar.gz</action>
         <action type="shell_command">rm v0.2.0.tar.gz</action>
         <action rename_to="kalign" type="move_file">
           <source>kalign-dunovo-0.2.0</source>
-          <destination>.</destination>
+          <destination>$TMP_WORK_DIR</destination>
         </action>
         <!-- download the ET submodule -->
         <action type="download_file">https://github.com/NickSto/ET/archive/v0.2.2.tar.gz</action>
@@ -42,17 +42,17 @@
         <action type="shell_command">rm v0.2.2.tar.gz</action>
         <action rename_to="ET" type="move_file">
           <source>ET-0.2.2</source>
-          <destination>.</destination>
+          <destination>$TMP_WORK_DIR</destination>
         </action>
         <!-- make and install -->
         <action type="shell_command">make clean</action>
         <action type="shell_command">make</action>
-        <action type="shell_command">ls -lFhAb &gt; /home/me/tmp/galaxy/install.root4.log</action>
+        <action type="shell_command">ls -lFhAb &gt; /home/me/tmp/galaxy/install.ls5.log</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>
           <destination_directory>$INSTALL_DIR</destination_directory>
         </action>
-        <action type="shell_command">ls -lFhAb $INSTALL_DIR &gt; /home/me/tmp/galaxy/install.install_dir1.log</action>
+        <action type="shell_command">ls -lFhAb $INSTALL_DIR &gt; /home/me/tmp/galaxy/install.ls6.log</action>
         <action type="set_environment">
           <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
         </action>