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comparison dunovo.xml @ 21:f509cd1d5a78 draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'fd1625359a101d8a6b0b8d97028cc8be509398f2\n'-dirty
author nick
date Thu, 04 Jan 2018 23:55:06 -0500
parents 78542cc82cb6
children db602e459536
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20:78542cc82cb6 21:f509cd1d5a78
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.9"> 2 <tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.10">
3 <description>from duplex sequencing alignments</description> 3 <description>from duplex sequencing alignments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.9">dunovo</requirement> 5 <requirement type="package" version="2.0.10">dunovo</requirement>
6 <!-- TODO: require Python 2.7 --> 6 <!-- TODO: require Python 2.7 -->
7 </requirements> 7 </requirements>
8 <version_command>make-consensi.py --version</version_command> 8 <version_command>make-consensi.py --version</version_command>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 make-consensi.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2' 10 make-consensi.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2'