comparison align_families.xml @ 21:f509cd1d5a78 draft

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'fd1625359a101d8a6b0b8d97028cc8be509398f2\n'-dirty

20:78542cc82cb6

<?xml version="1.0"?>
<tool id="align_families" name="Du Novo: Align families" version="2.0.9">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="7.221">mafft</requirement>
    <requirement type="package" version="2.0.9">dunovo</requirement>
    <!-- TODO: require Python 2.7 -->
  </requirements>
  <version_command>align-families.py --version</version_command>
  <command detect_errors="exit_code">align-families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
  </command>

-----

**Alignments**

The alignments are done using MAFFT, specifically the command
::

  $ mafft --nuc --quiet family.fa > family.aligned.fa

  </help>

21:f509cd1d5a78

<?xml version="1.0"?>
<tool id="align_families" name="Du Novo: Align families" version="2.0.10">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="7.221">mafft</requirement>
    <requirement type="package" version="2.0.10">dunovo</requirement>
    <!-- TODO: require Python 2.7 -->
  </requirements>
  <version_command>align-families.py --version</version_command>
  <command detect_errors="exit_code">align-families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
  </command>

-----

**Alignments**

When "MAFFT" is selected as the multiple sequence aligner, the alignments are done with the command
::

  $ mafft --nuc --quiet family.fa > family.aligned.fa

  </help>