# HG changeset patch
# User nick
# Date 1370317787 14400
# Node ID 34892857567bcef692a224c6a724db41bc5f2dec
# Parent  f6d9742c1da09224a9d2531fd439903772d68c4c
Ready for release - script

diff -r f6d9742c1da0 -r 34892857567b allele-counts.py
--- a/allele-counts.py	Thu May 30 13:49:37 2013 -0400
+++ b/allele-counts.py	Mon Jun 03 23:49:47 2013 -0400
@@ -202,7 +202,7 @@
       try:
         variant_counts[variant] = int(float(reads))
       except ValueError, e:
-        continue
+        fail("Error in input VCF: Variant count not a valid number. Failed on variant count string '"+reads+"'\nIn the following line:\n"+line)
 
     sample_counts[sample_names[i]] = variant_counts