Mercurial > repos > nick > allele_counts_1
view tests/real-nofilt.csv.out @ 10:db6f217dc45a
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Version 1.1.
- Added stranded output.
- Added, tested no-filter mode.
- now prints all sites.
- Changed handling of minor allele ties.
- Added test datasets.
- Revised help text.
author | nick |
---|---|
date | Fri, 06 Sep 2013 20:37:07 -0400 |
parents | |
children | 44c3abd1b767 |
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#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. THYROID chr1 246704250 29 0 0 0 29 1 A . 0.0 THYROID chr1 246704257 0 0 0 71 71 1 T . 0.0 THYROID chr1 246704268 104 0 0 0 104 1 A . 0.0 THYROID chr1 246704269 0 0 0 105 105 1 T . 0.0 THYROID chr1 246704363 0 72 3 0 75 0 C G 0.04 THYROID chr1 246704437 5 130 0 0 135 0 C A 0.03704 THYROID chr1 246707878 0 0 131 0 131 1 G . 0.0 THYROID chr1 246714587 30 0 43 0 73 2 G A 0.41096 THYROID chr1 246729215 1 0 1 88 90 0 T G 0.01111 THYROID chr1 246729216 1 0 1 90 92 0 T G 0.01087 THYROID chr1 246729378 16 7 0 0 23 0 A C 0.30435 THYROID chr1 246729392 29 0 10 0 39 0 A G 0.25641 THYROID chr7 91502881 0 0 0 26 26 1 T . 0.0 THYROID chr7 91502897 7 36 0 0 43 0 C A 0.16279