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view tests/real-mit.csv.out @ 10:db6f217dc45a

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Uploaded tarball. Version 1.1. - Added stranded output. - Added, tested no-filter mode. - now prints all sites. - Changed handling of minor allele ties. - Added test datasets. - Revised help text.
author nick
date Fri, 06 Sep 2013 20:37:07 -0400
parents
children 44c3abd1b767
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#SAMPLE	CHR	POS	A	C	G	T	CVRG	ALLELES	MAJOR	MINOR	MINOR.FREQ.PERC.
S1	chrM	2000	8	14903	1	1	14913	1	C	A	0.00054
S3	chrM	2000	10	13175	1	6	13192	1	C	A	0.00076
S1	chrM	3000	27966	42	44	12	28064	0	A	G	0.00157
S2	chrM	3000	20472	16	36	4	20528	1	A	G	0.00175
S3	chrM	3000	30267	40	46	10	30363	0	A	G	0.00152
S4	chrM	3000	15494	17	29	3	15543	0	A	G	0.00187
S1	chrM	4000	12258	3	2	4	12267	1	A	T	0.00033
S1	chrM	7000	4	26	3	13745	13778	0	T	C	0.00189
S2	chrM	7000	0	16	6	11392	11414	1	T	C	0.0014
S3	chrM	7000	4	13	10	13952	13979	1	T	C	0.00093
S3	chrM	8000	4	1	10066	3	10074	1	G	A	0.0004