Mercurial > repos > nick > allele_counts_1
view tests/real-mit-s.csv.out @ 10:db6f217dc45a
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Version 1.1.
- Added stranded output.
- Added, tested no-filter mode.
- now prints all sites.
- Changed handling of minor allele ties.
- Added test datasets.
- Revised help text.
| author | nick |
|---|---|
| date | Fri, 06 Sep 2013 20:37:07 -0400 |
| parents | |
| children | 44c3abd1b767 |
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#SAMPLE CHR POS +A +C +G +T -A -C -G -T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. S1 chrM 2000 1 9095 1 0 7 5808 0 1 14913 1 C A 0.00054 S3 chrM 2000 0 7933 0 4 10 5242 1 2 13192 1 C A 0.00076 S1 chrM 3000 17399 7 22 8 10567 35 22 4 28064 0 A G 0.00157 S2 chrM 3000 12535 3 24 2 7937 13 12 2 20528 1 A G 0.00175 S3 chrM 3000 18981 7 29 6 11286 33 17 4 30363 0 A G 0.00152 S4 chrM 3000 9254 1 15 2 6240 16 14 1 15543 0 A G 0.00187 S1 chrM 4000 6134 2 1 3 6124 1 1 1 12267 1 A T 0.00033 S1 chrM 7000 0 17 1 6216 4 9 2 7529 13778 0 T C 0.00189 S2 chrM 7000 0 7 2 5104 0 9 4 6288 11414 1 T C 0.0014 S3 chrM 7000 0 9 0 6446 4 4 10 7506 13979 1 T C 0.00093 S3 chrM 8000 3 1 5023 1 1 0 5043 2 10074 1 G A 0.0004