Mercurial > repos > nick > allele_counts_1
view tests/artificial-nofilt.csv.out @ 10:db6f217dc45a
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Version 1.1.
- Added stranded output.
- Added, tested no-filter mode.
- now prints all sites.
- Changed handling of minor allele ties.
- Added test datasets.
- Revised help text.
| author | nick |
|---|---|
| date | Fri, 06 Sep 2013 20:37:07 -0400 |
| parents | |
| children | 44c3abd1b767 |
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#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. THYROID chr1 0 30 0 0 0 30 1 A . 0.0 THYROID chr1 10 30 0 2 0 32 2 A G 0.0625 THYROID chr1 20 31 0 1 0 32 0 A G 0.03125 THYROID chr1 30 21 0 4 0 25 2 A G 0.16 THYROID chr1 40 22 0 3 0 25 0 A G 0.12 THYROID chr1 50 3 0 0 0 3 1 A . 0.0 THYROID chr1 60 2 0 2 0 4 2 A G 0.5 THYROID chr1 70 1 0 3 0 4 0 G A 0.25 THYROID chr1 80 104 0 3 0 107 0 A G 0.02804 THYROID chr1 90 100 2 11 0 113 3 A G 0.09735 THYROID chr1 100 100 1 11 0 112 0 A G 0.09821 THYROID chr1 120 0 0 0 0 0 0 . . 0.0 THYROID chr1 130 0 0 2 0 2 1 G . 0.0 THYROID chr1 140 0 0 1 0 1 0 G . 0.0 THYROID chr1 150 0 0 4 0 4 1 G . 0.0 THYROID chr1 160 0 0 3 0 3 0 G . 0.0 THYROID chr1 260 106 0 14 0 120 2 A G 0.11667 THYROID chr1 300 2 0 2 76 80 3 T G 0.025 THYROID chr1 310 12 0 12 76 100 3 T G 0.12 THYROID chr1 320 12 0 12 56 80 3 T A 0.15 THYROID chr1 330 7 0 7 66 80 3 T G 0.0875 THYROID chr1 340 1 0 1 98 100 0 T G 0.01 THYROID chr1 350 11 0 11 78 100 0 T A 0.11 THYROID chr1 400 32 0 8 0 40 2 A G 0.2 THYROID chr1 410 1 0 2 97 100 0 T G 0.02 THYROID chr1 420 104 0 0 0 104 1 A . 0.0