Mercurial > repos > nick > allele_counts_1
view tests/errors.vcf.in @ 15:2aa561f29da4
allele-counts.xml: Pull in new changes.
| author | nicksto <nmapsy@gmail.com> |
|---|---|
| date | Wed, 09 Dec 2015 11:13:51 -0500 |
| parents | db6f217dc45a |
| children |
line wrap: on
line source
##fileformat=VCFv4.1 ##comment="ARGS=-f 10 -c 10" ##comment="This is a test set of made-up sites, each created in order to test a certain type of error handling. It's meant to be run with -f 10 -c 10" ##fileDate=19700101 ##source=Dan ##reference=file:///scratch/dan/galaxy/galaxy-central/database/files/002/dataset_0000.dat ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> ##FORMAT=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> ##FORMAT=<ID=NC,Number=.,Type=String,Description="Nucleotide and indel counts"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT THYROID # A correct control chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15,-A=15, # List some bases more than once chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15,-A=15,+A=12, # Comma omissions chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15,-A=15 chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15-A=15, chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15,+G=1,+C=1,-A=15,-G=1, chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15,+G=1+C=1,-A=15,-G=1, # Wrong number of sample columns chr1 0 . A . . . AC=;AF= GT:AC:AF:NC 0/0:1:1:+A=15,-A=15, 0/0:1:1:+A=15,-A=15, chr1 0 . A . . . AC=;AF= GT:AC:AF:NC