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changeset 0:ca1aaaf80521 draft default tip

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repository_dependencies.xml
author nate
date Mon, 13 Jan 2014 13:27:25 -0500
parents
children
files repository_dependencies.xml
diffstat 1 files changed, 47 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Mon Jan 13 13:27:25 2014 -0500
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+<?xml version="1.0"?>
+<repositories description="Metadependency for all tools migrated in the SAMtools migration (0008).">
+  <repository changeset_revision="c9e926d9d87e" name="bam_to_sam" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="314830c0db00" name="categorize_elements_satisfying_criteria" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="55069ba5af85" name="compute_motif_frequencies_for_all_motifs" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d66f925bfbeb" name="compute_motifs_frequency" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="72ce01e2dad9" name="ctd_batch" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fa09b51ed576" name="delete_overlapping_indels" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6698e4d94ea5" name="divide_pg_snp" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d1412b13879d" name="draw_stacked_barplots" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="de44f4045b05" name="fasta_clipping_histogram" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2cbdd2fc365b" name="fasta_formatter" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8789a0450ad4" name="fasta_nucleotide_changer" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="63b6300eca39" name="fastq_quality_boxplot" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ee975578075f" name="fastq_quality_converter" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e72f9ddf89c4" name="fastq_quality_filter" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9d253ab73d8b" name="fastq_to_fasta" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8dfa8ecd0191" name="fastx_artifacts_filter" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7b5eb2503f6d" name="fastx_barcode_splitter" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="743d895d28db" name="fastx_clipper" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="460c78dbadf8" name="fastx_collapser" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f6abd8b6a870" name="fastx_nucleotides_distribution" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8c60fa8ae153" name="fastx_quality_statistics" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4ed1114bfe88" name="fastx_renamer" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a710c1b9776b" name="fastx_reverse_complement" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0288c4b3a53f" name="fastx_trimmer" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6b09d2ed034f" name="hgv_fundo" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="de1d3f4e5277" name="hgv_hilbertvis" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="79112aff0ccc" name="indels_3way" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6611321d8bbb" name="microsatellite_birthdeath" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d1bf24c1350f" name="multispecies_orthologous_microsats" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="50333b5ac867" name="mutate_snp_codon" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8afc93a5f9ae" name="pileup_interval" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5c3984014c07" name="pileup_parser" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="71c1ee1ef131" name="sam2interval" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="527fee522203" name="sam_bitwise_flag_filter" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2a36d975b360" name="sam_merge" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="cb3966035753" name="sam_pileup" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d59a7ac34414" name="sam_to_bam" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1bbde47ebd2a" name="samtools_flagstat" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f8ea7725e333" name="samtools_mpileup" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="27136ac45e90" name="samtools_rmdup" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8f9af81f2cfe" name="samtools_slice_bam" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e7d1ffdbb9b6" name="split_paired_reads" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3d24b35de20a" name="t_test_two_samples" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1cdc54f92956" name="xy_plot" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+</repositories>