# HG changeset patch
# User nate
# Date 1753811711 0
# Node ID 496a8a7f35f9d5ab09bf807c6d20f9553fc864f1
# Parent  c6a1b04e2f2b17a82cb2c4a39823b780a8eb673b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit eca2a7b4b6505f9ff30839ae7e85f4e6c4e77754

diff -r c6a1b04e2f2b -r 496a8a7f35f9 data_manager/hisat2_index_builder.xml
--- a/data_manager/hisat2_index_builder.xml	Tue Jul 29 17:43:03 2025 +0000
+++ b/data_manager/hisat2_index_builder.xml	Tue Jul 29 17:55:11 2025 +0000
@@ -26,7 +26,7 @@
 
         mkdir -p '${out_file.extra_files_path}' &&
         ln -s '${all_fasta_source.fields.path}' '${out_file.extra_files_path}/${fasta_file_name}' &&
-        working="\$(pwd)"` &&
+        working="\$(pwd)" &&
         cd '${out_file.extra_files_path}' &&
 
         hisat2-build -p "\${GALAXY_SLOTS:-1}"