Mercurial > repos > nate > data_manager_hisat2_index_builder

comparison data_manager/hisat2_index_builder.xml @ 4:496a8a7f35f9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit eca2a7b4b6505f9ff30839ae7e85f4e6c4e77754
author nate
date Tue, 29 Jul 2025 17:55:11 +0000
parents c6a1b04e2f2b
children
comparison
equal deleted inserted replaced
3:c6a1b04e2f2b 4:496a8a7f35f9
24 #end if 24 #end if
25 #end if 25 #end if
26 26
27 mkdir -p '${out_file.extra_files_path}' && 27 mkdir -p '${out_file.extra_files_path}' &&
28 ln -s '${all_fasta_source.fields.path}' '${out_file.extra_files_path}/${fasta_file_name}' && 28 ln -s '${all_fasta_source.fields.path}' '${out_file.extra_files_path}/${fasta_file_name}' &&
29 working="\$(pwd)"` && 29 working="\$(pwd)" &&
30 cd '${out_file.extra_files_path}' && 30 cd '${out_file.extra_files_path}' &&
31 31
32 hisat2-build -p "\${GALAXY_SLOTS:-1}" 32 hisat2-build -p "\${GALAXY_SLOTS:-1}"
33 #if $advanced.adv_param_select == 'yes': 33 #if $advanced.adv_param_select == 'yes':
34 --noauto 34 --noauto