Mercurial > repos > nate > data_manager_hisat2_index_builder

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit eca2a7b4b6505f9ff30839ae7e85f4e6c4e77754
author nate
date Tue, 29 Jul 2025 17:55:11 +0000
parents b3d94db291c1
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f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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1 <?xml version="1.0"?>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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2 <data_managers>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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3 <data_manager tool_file="data_manager/hisat2_index_builder.xml" id="hisat2_index_builder">
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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4 <data_table name="hisat2_indexes">
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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5 <output>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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6 <column name="value" />
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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7 <column name="dbkey" />
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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8 <column name="name" />
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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9 <column name="path" output_ref="out_file" >
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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10 <move type="directory" relativize_symlinks="True">
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/hisat_index/v2/${value}</target>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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13 </move>
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b3d94db291c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 5c5d8acf6955dc4f404998ac7929f13363ef2c41
nate
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/hisat_index/v2/${value}/${value}</value_translation>
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f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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15 <value_translation type="function">abspath</value_translation>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
parents:
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16 </column>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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17 </output>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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18 </data_table>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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19 </data_manager>
f7c16185b8e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 36a598c1014c3fa9696c4bdbf13d98a9e1e528c9
nate
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20 </data_managers>