# HG changeset patch
# User mzeidler
# Date 1380536414 14400
# Node ID 82a32e39fb1495616b4e9511f038be73f6a4c2b4
# Parent  943da5b73b2b51d888bb4562c0c818f8591d8c22
Uploaded

diff -r 943da5b73b2b -r 82a32e39fb14 vhom_regionplot.py
--- a/vhom_regionplot.py	Mon Sep 30 06:06:33 2013 -0400
+++ b/vhom_regionplot.py	Mon Sep 30 06:20:14 2013 -0400
@@ -30,8 +30,7 @@
 rcParams['patch.edgecolor'] = 'white'
 rcParams['patch.linewidth']=0.5
 rcParams['patch.facecolor'] = 'black'
-rcParams['font.family'] = 'sans-serif'
-rcParams['font.sans-serif'] = ['Lucida Grande','Verdana','Arial']
+rcParams['font.family'] = 'StixGeneral'
 
 
 def color_variants(r,g,b):
@@ -112,7 +111,7 @@
         rval.append("sample: '%s',"%sample)
         rval.append("data: %s_array,"%sample)
         rval.append("files: %s_files,"%sample)
-        r,g,b,a=cm.hsv(1.*(1-(i/n_samples)))
+        r,g,b,a=cm.hsv(1.*(1-((i/n_samples)))
         rval.append("colors: %s," %color_variants(r,g,b))
         rval.append("legend: true,")
         rval.append("tab: 'reads',")
@@ -196,7 +195,7 @@
                   plt.bar(position[sample][level],values, width=0.8,bottom=lastvalues ,color=colors)
               for pos in range(len(values)):
                   if position[sample][level][pos] not in bottom:
-                        bottom[position[sample][level][pos]]=0
+                        bottom[position[sample][level][pos]]=values[pos]
                   else:
                         bottom[position[sample][level][pos]]+=values[pos]
           pos=[x+0.4 for x in range(len(stat_dict[sample]))]