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1 /**
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2 * jqBarGraph - jQuery plugin
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3 * @version: 1.1 (2011/04/03)
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4 * @requires jQuery v1.2.2 or later
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5 * @author Ivan Lazarevic
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6 * Examples and documentation at: http://www.workshop.rs/jqbargraph/
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7 *
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8 * Dual licensed under the MIT and GPL licenses:
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9 * http://www.opensource.org/licenses/mit-license.php
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10 * http://www.gnu.org/licenses/gpl.html
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11 *
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12 * @param data: arrayOfData // array of data for your graph
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13 * @param title: false // title of your graph, accept HTML
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14 * @param barSpace: 10 // this is default space between bars in pixels
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15 * @param width: 400 // default width of your graph ghhjgjhg
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16 * @param height: 200 //default height of your graph
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17 * @param color: '#000000' // if you don't send colors for your data this will be default bars color
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18 * @param colors: false // array of colors that will be used for your bars and legends
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19 * @param lbl: '' // if there is no label in your array
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20 * @param sort: false // sort your data before displaying graph, you can sort as 'asc' or 'desc'
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21 * @param position: 'bottom' // position of your bars, can be 'bottom' or 'top'. 'top' doesn't work for multi type
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22 * @param prefix: '' // text that will be shown before every label
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23 * @param postfix: '' // text that will be shown after every label
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24 * @param animate: true // if you don't need animated appereance change to false
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25 * @param speed: 2 // speed of animation in seconds
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26 * @param legendWidth: 100 // width of your legend box
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27 * @param legend: false // if you want legend change to true
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28 * @param legends: false // array for legend. for simple graph type legend will be extracted from labels if you don't set this
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29 * @param type: false // for multi array data default graph type is stacked, you can change to 'multi' for multi bar type
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30 * @param showValues: true // you can use this for multi and stacked type and it will show values of every bar part
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31 * @param showValuesColor: '#fff' // color of font for values
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32
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33 * @example $('#divForGraph').jqBarGraph({ data: arrayOfData });
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34
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35 **/
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36
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37 (function($) {
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38 var opts = new Array;
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39 var level = new Array;
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40
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41 $.fn.jqBarGraph = $.fn.jqbargraph = function(options){
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42
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43 init = function(el){
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44
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45 opts[el.id] = $.extend({}, $.fn.jqBarGraph.defaults, options);
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46 $(el).css({ 'width': opts[el.id].width, 'height': opts[el.id].height, 'position':'relative', 'text-align':'center' });
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47
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48
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49 doGraph(el);
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50
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51 };
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52
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53 // sum of array elements
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54 sum = function(ar,index){
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55 total = 0;
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56 for(val in ar){
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57 total += ar[val][index];
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58 }
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59 return total.toFixed(2);
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60 };
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61
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62 // count max value of array
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63 max = function(ar,index){
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64 maxvalue = 0;
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65 for(var val in ar){
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66 value = ar[val][0];
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67 if(value instanceof Array) value = sum(value,index);
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68 if (parseFloat(value) > parseFloat(maxvalue)) maxvalue=value;
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69 }
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70 return maxvalue;
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71 };
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72
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73 // max value of multi array
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74 maxMulti = function(ar,index){
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75 maxvalue = 0;
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76 maxvalue2 = 0;
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77
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78 for(var val in ar){
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79 ar2 = ar[val][0];
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80
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81 for(var val2 in ar2){
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82 if(ar2[val2][index]>maxvalue2) maxvalue2 = ar2[val2][index];
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83 }
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84
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85 if (maxvalue2>maxvalue) maxvalue=maxvalue2;
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86 }
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87
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88 return maxvalue;
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89 };
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90
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91
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92 doGraph = function(el){
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93
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94 arr = opts[el.id];
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95 data = arr.data;
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96 if(arr.tab=='reads'){
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97 val_index=0;
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98 }
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99 else{
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100 val_index=1;
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101 }
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102
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103 //check if array is bad or empty
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104 if(data == undefined) {
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105 $(el).html('There is not enought data for graph');
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106 return;
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107 }
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108 //sorting ascending or descending
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109 if(arr.tab == 'reads'){
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110 if(arr.sort == 'asc'){
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111 data.sort(sortReadsAsc);
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112 }
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113 if(arr.sort == 'desc'){
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114 data.sort(sortReadsDesc);
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115 }
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116 }
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117 if(arr.tab == 'basepairs'){
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118 if(arr.sort == 'asc'){
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119 data.sort(sortBasesAsc);
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120 }
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121 if(arr.sort == 'desc'){
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122 data.sort(sortBasesDesc);
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123 }
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124 }
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125 if(arr.sortBar == 'asc') sortBars(data, barAsc);
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126 if(arr.sortBar == 'desc')sortBars(data, barDesc);
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127
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128
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129
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130 legend = '';
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131 prefix = arr.prefix;
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132 postfix = arr.postfix;
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133 space = arr.barSpace; //space between bars
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134 legendWidth = arr.legend ? arr.legendWidth : 0; //width of legend box
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135 fieldWidth = ($(el).width()-legendWidth)/data.length; //width of bar
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136 totalHeight = $(el).height(); //total height of graph box
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137 var leg = new Array(); //legends array
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138
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139 //max value in data, I use this to calculate height of bar
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140 max = max(data,val_index);
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141
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142 color_map={};
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143 color_map["pathogen"]=arr.colors[0];
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144 color_map["ambiguous"]=arr.colors[1];
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145 color_map["human"]=arr.colors[2];
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146
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147 if(arr.tab=='reads'){
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148 val_index=0;
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149 }
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150 else{
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151 val_index=1;
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152
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153 }
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154
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155 for(var val in data){
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156
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157 valueData = data[val][0];
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158 if (valueData instanceof Array)
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159 value = sum(valueData,val_index);
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160 else
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161 value = valueData;
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162
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163 lbl = data[val][1];
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164 unique = val+el.id; //unique identifier
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165 divid=""+el.id;
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166
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167 if(arr.type == 'multi') color = 'none';
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168
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169 if (lbl == undefined) lbl = arr.lbl;
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170
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171 margin_top=14/(data.length);
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172
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173
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174 out = "<div class='graphField"+el.id+"' id='graphField"+unique+"' style='position: absolute'>";
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175 out += "<div class='graphValue"+el.id+"' id='graphValue"+unique+"'>"+parseInt(value)+"</div>";
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176
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177 out += "<div class='graphBar"+el.id+"' id='graphFieldBar"+unique+"' style='background-color:#fff;position: relative; overflow: hidden;'></div>";
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178 //console.log(color)
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179 // if there is no legend or exist legends display lbl at the bottom
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180
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181 out += "<a class='graphLabelLink' href=#files"+el.id+" onclick=fillDiv('"+el.id+"','"+valueData[0][3]+"_"+lbl+"')><div class='graphLabel"+el.id+"' id='graphLabel"+unique+"'style='margin-top:"+margin_top+"px;'>"+lbl+"</div></a>";
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182 out += "</div>";
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183
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184
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185
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186 $(el).append(out);
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187 $(".graphLabel"+el.id).css({'-webkit-transform': 'rotate(30deg)', '-moz-transform': 'rotate(30deg)','-o-transform': 'rotate(30deg)', '-ms-transform': 'rotate(30deg)','transform': 'rotate(30deg)', 'height':'100'});
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188 $('a.graphLabel').css({
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189 'text-decoration': 'none',
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190 'color':'black'
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191 });
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192
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193 //$('#graphLabel'+el.id).rotateLeft();
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194
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195 //size of bar
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196 totalHeightBar = totalHeight - $('.graphLabel'+el.id).height() - $('.graphValue'+el.id).height()-margin_top;
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197 fieldHeight = (totalHeightBar*value)/max;
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198 $('#graphField'+unique).css({
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199 'left': (fieldWidth)*val,
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200 'width': fieldWidth-space,
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201 'margin-left': space});
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202
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203 // multi array
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204 if(valueData instanceof Array){
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205
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206 if(arr.type=="multi"){
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207
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208 maxe = maxMulti(data,val_index);
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209 totalHeightBar = fieldHeight = totalHeight - $('.graphLabel'+el.id).height()-margin_top;
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210 $('.graphValue'+el.id).remove();
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211 } else {
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212
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213 maxe = max;
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214 }
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215
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216 for (i in valueData){
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217 heig = (totalHeightBar*valueData[i][val_index]/maxe);
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218 if(navigator.userAgent.match('Safari') && !navigator.userAgent.match('Chrom')){
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219
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220 heig = heig + (arr.borderSize/1.85);
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221 }
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222
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223 wid = parseInt((fieldWidth-space)/valueData.length);
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224
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225 sv = ''; // show values
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226 fs = 0; // font size
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227 if (arr.showValues){
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228 sv = arr.prefix+valueData[i][0]+arr.postfix;
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229 fs = 12; // font-size is 0 if showValues = false
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230 }
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231 o = "<a class='subBarLink' href=#files"+el.id+" onclick=fillDiv('"+el.id+"','"+valueData[i][3]+"_"+lbl+"','"+valueData[i][5]+"')><div class='subBars"+el.id+"' style=' box-sizing:border-box; -moz-box-sizing:border-box; -ms-box-sizing:border-box; -webkit-box-sizing:border-box; height:"+heig+"px; border-top:"+arr.borderSize+"px solid; border-color: "+arr.showValuesColor+"; background-color: "+color_map[valueData[i][2]]+"; left:"+wid*i+"px; color:"+arr.showValuesColor+"; font-size:"+fs+"px' >"+sv+"</div></a>";
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232 $('#graphFieldBar'+unique).prepend(o);
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233 }
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234 }
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235
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236 if(arr.type=='multi')
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237 $('.subBars'+el.id).css({ 'width': wid, 'position': 'absolute', 'bottom': 0 });
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238
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239 //position of bars
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240 if(arr.position == 'bottom') $('.graphField'+el.id).css('bottom',0);
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241
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242
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243
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244
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245
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246 // animated apearing
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247 if(arr.animate){
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248 $('#graphFieldBar'+unique).css({ 'height' : 0 });
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249 $('#graphFieldBar'+unique).animate({'height': fieldHeight},arr.speed*1000);
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250 } else {
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251 $('#graphFieldBar'+unique).css({'height': fieldHeight});
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252 }
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253
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254 }
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255
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256
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257
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258 createLegend(color_map,el.id); // create legend from array
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259 createLinks(el.id);
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260 //position of legend
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261
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262 $(el).append("<div id='legendHolder"+unique+"'></div>");
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263 $('#legendHolder'+unique).css({ 'width': legendWidth, 'float': 'right', 'margin-left':'100px','text-align' : 'left'});
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264 $('#legendHolder'+unique).append(legend);
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265 $('#legendHolder'+unique).append(links);
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266 $('.legendBar'+el.id).css({ 'float':'left', 'margin': 3, 'margin-left':'10','height': 12, 'width': 20, 'font-size': 0});
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267 $('.linkBar'+el.id).css({'margin-left':'10'});
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268
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269
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270 $("#sortAsc"+el.id).click(function(){
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271 if(opts[el.id].sort!='asc'){
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272 opts[el.id].sort='asc';
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273 $('#graphHolder'+el.id).html('');
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274 $('#graphHolder'+el.id).jqbargraph(opts[el.id]);
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275 }
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276
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277 });
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278 $("#sortDesc"+el.id).click(function(){
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279 if(opts[el.id].sort!='desc'){
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280 opts[el.id].sort='desc';
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281 $('#graphHolder'+el.id).html('');
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282 $('#graphHolder'+el.id).jqbargraph(opts[el.id]);
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283 }
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284
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285 });
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286 $("#sortBarAsc"+el.id).click(function(){
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287 if(opts[el.id].sortBar!='asc'){
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288 opts[el.id].sortBar='asc';
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289 $('#graphHolder'+el.id).html('');
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290 $('#graphHolder'+el.id).jqbargraph(opts[el.id]);
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291 }
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292
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293 });
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294 $("#sortBarDesc"+el.id).click(function(){
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295 if(opts[el.id].sortBar!='desc'){
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296 opts[el.id].sortBar='desc';
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297 $('#graphHolder'+el.id).html('');
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298 $('#graphHolder'+el.id).jqbargraph(opts[el.id]);
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299 }
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300
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301 });
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302
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303 $("#showBasepairs"+el.id).click(function(){
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304 opts[el.id].tab='basepairs';
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305 $('#graphHolder'+el.id).html('');
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306 $('#graphHolder'+el.id).jqbargraph(opts[el.id]);
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307
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308
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309
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310 });
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311 $("#showReads"+el.id).click(function(){
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312 opts[el.id].tab='reads';
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313 $('#graphHolder'+el.id).html('');
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314 $('#graphHolder'+el.id).jqbargraph(opts[el.id]);
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315
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316
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317
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318 });
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319
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320
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321
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322 //position of title
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323 if(arr.title){
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324 $(el).wrap("<div id='graphHolder"+el.id+"'></div>");
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325 if(arr.tab=='reads'){
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326 $('#graphHolder'+el.id).prepend("<div id='label"+el.id+"'>Cumulative reads assigned to family</div>").css({ 'width' : arr.width+'px', 'text-align' : 'center' });
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327 }else{
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328 $('#graphHolder'+el.id).prepend("<div id='label"+el.id+"'>Cumulative basepairs assigned to family</div>").css({ 'width' : arr.width+'px', 'text-align' : 'center' });
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329 }
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330 $('#graphHolder'+el.id).prepend("<a href=#files"+el.id+" onclick=fillDiv('"+el.id+"')>"+arr.title+"</a>").css({ 'width' : arr.width+'px', 'text-align' : 'center' });
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331
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332 }
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333 $("#graphHolder"+el.id).append("<div class='files"+el.id+"' id='files"+el.id+"' ></div><p/>");
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334 $('.files'+el.id).css({'width' : arr.width+'px','background-color':'silver', 'border':'2px solid gray', 'display':'none'})
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335
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336 $("#graphHolder"+el.id).append("<div class='image"+el.id+"' id='image"+el.id+"' ></div>");
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337 $('.image'+el.id).css({'width' : arr.width+'px','background-color':'silver', 'border':'2px solid gray', 'display':'none'})
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338
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339 };
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340
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341
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342 //creating legend from array
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343 createLegend = function(color_map,id){
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344 legend = '';
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345 for(var val in color_map){
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346 legend += "<div id='legend"+val+"' style='overflow: hidden; zoom: 1;'>";
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347 legend += "<div class='legendBar"+id+"' id='legendColor"+val+"' style='background-color:"+color_map[val]+"'></div>";
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348 legend += "<div class='legendLabel"+id+"' id='graphLabel"+unique+"'>"+val+"</div>";
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349 legend += "</div>";
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350 }
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351 };
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352
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353 createLinks = function(id){
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354 links="<div class='linkBar"+id+"'>";
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355 links+="<div ><a href='javascript:void(0);' id='sortAsc"+id+"' >sort ascending</a></div>"
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356 links+="<div ><a href='javascript:void(0);' id='sortDesc"+id+"'>sort descending</a></div>"
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357 links+="<div ><a href='javascript:void(0);' id='sortBarAsc"+id+"'>sort bars ascending</a></div>"
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358 links+="<div ><a href='javascript:void(0);' id='sortBarDesc"+id+"'>sort bars descending</a></div>"
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359 if(opts[id].tab=='reads'){
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360 links+="<div ><a href='javascript:void(0);' id='showBasepairs"+id+"'>show basepair chart </a></div>"
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361 }else{
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362 links+="<div ><a href='javascript:void(0);' id='showReads"+id+"'>show read chart </a></div>"
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363 }
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364 links+="</div>"
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365
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366
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367 };
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368
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369 fillDiv = function (elid, dir, region) {
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370
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371
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372
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373 arr=opts[elid];
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374
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375 dict=arr.files;
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376
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377 generateDownloadLink = function(family,region,filetype){
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378 out=" no file ";
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379
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380 if($.inArray("region_"+region+"_"+filetype,dict[family][region])!=-1){
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381 out="<a href="+family+"/region_"+region+"_"+filetype+">download</a>";
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382 }
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383 return out;
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384
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385 };
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386 generateShowLink = function(family,region){
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387 out=" no image ";
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388
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389 if($.inArray("region_"+region+"_consensus.png",dict[family][region])!=-1){
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390 out="<a href=#image"+elid+" onclick=showImage('"+elid+"','"+region+"','"+ family +"/region_"+region+"_consensus.png')>show</a>";
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391 }
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392 return out;
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393
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394 };
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395
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396
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397 data = arr.data
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398 for(var val in data){
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399 for(var element in data[val][0]){
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400 dict[data[val][0][0][3]+"_"+data[val][1]][data[val][0][element][5]].push([data[val][0][element][0],data[val][0][element][1],data[val][0][element][4]]);
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401
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402 }
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403 }
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404
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405 var div = document.getElementById("files" + elid);
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406 div.innerHTML="";
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407
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15
|
408 out = "<div><H3>Files for Sample "+arr.sample+"</H3></div><p/>";
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|
12
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409
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15
|
410 out += "<div class='" + elid + "_files' id='" + elid + "_files'><table id='"+elid+"table' class='"+elid+"table' border=1 cellpadding=3 cellspacing=0 style=' border: 1pt solid #000000; border-Collapse: collapse; font-size: 12px;'>";
|
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12
|
411 out += "<tr><th>family</th><th>region</th><th>#reads</th><th>#basepairs</th><th>region length</th><th>unaligned fasta</th><th>bam alignment</th><th>consensus fasta</th><th>consensus diagram</th></tr>"
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|
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412 if (!dir) {
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|
413 for (var directory in dict) {
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414 //out += "<b>"+directory+"</b>";
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415 //out += "<div class='dirlist' id='" + directory + "_files'";
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416 for (var region in dict[directory]) {
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417 last = dict[directory][region][dict[directory][region].length-1];
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418 if(last instanceof Array && last[0]){
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|
419 out += "<tr><td>"+directory+"</td><td>"+region+"</td><td>"+last[0]+"</td><td>"+last[1]+"</td><td>"+last[2]+"</td><td>"+generateDownloadLink(directory,region,"unaligned.fa.bzip2")+"</td><td>"+generateDownloadLink(directory,region,"alignment.bam")+"</td><td>"+generateDownloadLink(directory,region,"consensus.fa")+"</td><td>"+generateShowLink(directory,region)+" "+generateDownloadLink(directory,region,"consensus.png")+"</td></tr>";
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|
|
420 }
|
|
|
421 }
|
|
|
422 out += "</div>";
|
|
|
423 }
|
|
|
424 } else {
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|
|
425 out += "<b>"+ dir+"</b>" ;
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|
|
426
|
|
|
427 if (!region) {
|
|
|
428 for (var region in dict[dir]) {
|
|
|
429 last = dict[dir][region][dict[dir][region].length-1];
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|
|
430 if(last instanceof Array && last[0]){
|
|
|
431 out += "<tr><td>"+dir+"</td><td>"+region+"</td><td>"+last[0]+"</td><td>"+last[1]+"</td><td>"+last[2]+"</td><td>"+generateDownloadLink(dir,region,"unaligned.fa.bzip2")+"</td><td>"+generateDownloadLink(dir,region,"alignment.bam")+"</td><td>"+generateDownloadLink(dir,region,"consensus.fa")+"</td><td>"+generateShowLink(dir,region)+" "+generateDownloadLink(dir,region,"consensus.png")+"</td></tr>";
|
|
|
432 }
|
|
|
433 }
|
|
|
434 } else {
|
|
|
435
|
|
|
436 last = dict[dir][region][dict[dir][region].length-1];
|
|
|
437 if(last instanceof Array && last[0]){
|
|
|
438 out += "<tr><td>"+dir+"</td><td>"+region+"</td><td>"+last[0]+"</td><td>"+last[1]+"</td><td>"+last[2]+"</td><td>"+generateDownloadLink(dir,region,"unaligned.fa.bzip2")+"</td><td>"+generateDownloadLink(dir,region,"alignment.bam")+"</td><td>"+generateDownloadLink(dir,region,"consensus.fa")+"</td><td>"+generateShowLink(dir,region)+" "+generateDownloadLink(dir,region,"consensus.png")+"</td></tr>";
|
|
|
439 }
|
|
|
440 }
|
|
|
441 }
|
|
|
442 out += "</div>";
|
|
|
443
|
|
|
444 $(div).append(out);
|
|
|
445 $(div).append("<div class='close_files"+elid+"'style='cursor:pointer;'>x</div>");
|
|
|
446 $("a").css({'color':'black'});
|
|
|
447 $("table").css({'border':'collapse'});
|
|
|
448
|
|
|
449 $(".close_files"+elid).click(function(){
|
|
|
450 $('.files'+elid).animate({'height':'0px'},1000,'',function(){
|
|
|
451 $('.files'+elid).css({'display':'none'});
|
|
|
452 $('.files'+elid).removeClass("selected");
|
|
|
453 });
|
|
|
454
|
|
|
455
|
|
|
456 });
|
|
|
457 $("div.close_files"+elid).css({'color':'white','position':'absolute','top':'2','left':'2','background-color':arr.colors[1],'border':'1px solid white','border-radius':'20px','height':'20px','width':'20px','text-align': 'center'});
|
|
|
458 $("a.close_files"+elid).css({'color':'white', 'text-decoration': 'none'});
|
|
|
459 $('.files'+elid).css({'width': 'auto','display':'none'});
|
|
|
460 wi=$('.files'+elid).width()+15;
|
|
|
461
|
|
|
462
|
|
|
463
|
|
|
464 if(!$('.files'+elid).hasClass("selected")){
|
|
|
465 $('.files'+elid).css({'height': 'auto','display':'none'});
|
|
|
466 hei=$('.files'+elid).height();
|
|
|
467 hei=parseInt(hei)+10;
|
|
|
468 hei=hei>400? hei=400 : hei;
|
|
|
469 $('.files'+elid).css({'width':wi+'px','position':'relative','height':'0px', 'overflow' : 'auto','background-color':'rgb(223, 229, 249)', 'border':'2px solid silver', 'display':'block' });
|
|
|
470 $('.files'+elid).animate({'height':hei+'px'}, 1000,'',function(){
|
|
|
471
|
|
|
472 $('.files'+elid).addClass("selected");
|
|
|
473 });
|
|
|
474 }
|
|
|
475 else{
|
|
|
476
|
|
|
477 curr_hei=$('.files'+elid).height();
|
|
|
478 $('.files'+elid).css({'height': 'auto','display':'none'});
|
|
|
479 hei=$('.files'+elid).height();
|
|
|
480 hei=parseInt(hei)+10;
|
|
|
481 hei=hei>400? hei=400 : hei;
|
|
36
|
482 $('.files'+elid).css({'height': curr_hei+'px', 'width':wi+'px','position':'relative', 'overflow' : 'auto','background-color':'rgb(223, 229, 249)', 'border':'2px solid silver', 'display':'block' }).animate({'height':hei+'px'}, 1000);
|
|
12
|
483 }
|
|
|
484 };
|
|
|
485
|
|
|
486
|
|
|
487 showImage = function (elid,region, consensus_image,wi) {
|
|
|
488 var div = document.getElementById("image" + elid);
|
|
|
489 div.innerHTML="";
|
|
15
|
490 out="<div><H3>Consensus Image for Region "+region+"</H3></div>";
|
|
35
|
491 newImg= new Image();
|
|
36
|
492 newImg.src=consensus_image;
|
|
37
|
493 wid=0;
|
|
|
494 hig=0;
|
|
|
495 newImg.onload = function(){
|
|
|
496 wid=this.width;
|
|
|
497 hig=this.height;
|
|
|
498 };
|
|
|
499
|
|
34
|
500 out+="<img id='image_file"+elid+"' src="+consensus_image+" alt="+consensus_image+" style='width:"+wid+";height:"+hig+";'>";
|
|
12
|
501 $(div).append(out)
|
|
|
502
|
|
|
503
|
|
|
504 $(div).append("<div class='close_image"+elid+"'style='cursor:pointer;'>x</div>");
|
|
|
505 $(".close_image"+elid).click(function(){
|
|
|
506
|
|
|
507 $('.image'+elid).css({'display':'none'});
|
|
|
508 $('.image'+elid).removeClass("selected");
|
|
|
509
|
|
|
510
|
|
|
511 });
|
|
|
512 $("div.close_image"+elid).css({'color':'white','position':'absolute','top':'2','left':'2','background-color':arr.colors[1],'border':'1px solid white','border-radius':'20px','height':'20px','width':'20px','text-align': 'center'});
|
|
|
513 $("a.close_image"+elid).css({'color':'white', 'text-decoration': 'none'});
|
|
|
514
|
|
|
515 wi=$('.files'+elid).width();
|
|
|
516
|
|
|
517
|
|
|
518 if(!$('.image'+elid).hasClass("selected")){
|
|
|
519 $('.image'+elid).css({'width':wi+'px','position':'relative','height':'auto', 'overflow' : 'auto','background-color':'rgb(223, 229, 249)', 'border':'2px solid silver', 'display':'block' });
|
|
|
520
|
|
|
521 }
|
|
|
522
|
|
|
523 };
|
|
|
524
|
|
|
525
|
|
|
526 this.each (
|
|
|
527 function()
|
|
|
528 { init(this); }
|
|
|
529 )
|
|
|
530
|
|
|
531 };
|
|
|
532
|
|
|
533 // default values
|
|
|
534 $.fn.jqBarGraph.defaults = {
|
|
|
535 sample: 'no_sample_id',
|
|
|
536 barSpace: 10,
|
|
|
537 width: 400,
|
|
|
538 height: 600,
|
|
|
539 color: '#000000',
|
|
|
540 colors: false,
|
|
|
541 lbl: '',
|
|
|
542 sort: false, // 'asc' or 'desc'
|
|
|
543 sortBar: false,
|
|
|
544 tab: 'reads',
|
|
|
545 position: 'bottom', // or 'top' doesn't work for multi type
|
|
|
546 prefix: '',
|
|
|
547 postfix: '',
|
|
|
548 animate: true,
|
|
|
549 speed: 3.0,
|
|
|
550 legendWidth: 150,
|
|
|
551 legend: false,
|
|
|
552 type: false, // or 'multi'
|
|
|
553 showValues: false,
|
|
|
554 borderSize: 1,
|
|
|
555 showValuesColor: '#fff',
|
|
|
556 title: false
|
|
|
557 };
|
|
|
558
|
|
|
559
|
|
|
560 //sorting functions
|
|
|
561 function sortReadsAsc(a,b){
|
|
|
562 sum_a=0
|
|
|
563 for(var values in a){
|
|
|
564 if(a[values] instanceof Array){
|
|
|
565 for(var val in a[values]){
|
|
|
566 sum_a+=a[values][val][0];
|
|
|
567 }
|
|
|
568 }
|
|
|
569 }
|
|
|
570 sum_b=0
|
|
|
571 for(var values in b){
|
|
|
572 if(b[values] instanceof Array){
|
|
|
573 for(var val in b[values]){
|
|
|
574 sum_b+=b[values][val][0];
|
|
|
575 }
|
|
|
576 }
|
|
|
577 }
|
|
|
578
|
|
|
579 if (sum_a<sum_b) return -1;
|
|
|
580 if (sum_a>sum_b) return 1;
|
|
|
581 return 0;
|
|
|
582 }
|
|
|
583 function sortBasesAsc(a,b){
|
|
|
584 sum_a=0
|
|
|
585 for(var values in a){
|
|
|
586 if(a[values] instanceof Array){
|
|
|
587 for(var val in a[values]){
|
|
|
588 sum_a+=a[values][val][1];
|
|
|
589 }
|
|
|
590 }
|
|
|
591 }
|
|
|
592 sum_b=0
|
|
|
593 for(var values in b){
|
|
|
594 if(b[values] instanceof Array){
|
|
|
595 for(var val in b[values]){
|
|
|
596 sum_b+=b[values][val][1];
|
|
|
597 }
|
|
|
598 }
|
|
|
599 }
|
|
|
600
|
|
|
601 if (sum_a<sum_b) return -1;
|
|
|
602 if (sum_a>sum_b) return 1;
|
|
|
603 return 0;
|
|
|
604 }
|
|
|
605
|
|
|
606 function sortReadsDesc(a,b){
|
|
|
607 sum_a=0
|
|
|
608 for(var values in a){
|
|
|
609 if(a[values] instanceof Array){
|
|
|
610 for(var val in a[values]){
|
|
|
611 sum_a+=a[values][val][0];
|
|
|
612 }
|
|
|
613 }
|
|
|
614 }
|
|
|
615 sum_b=0
|
|
|
616 for(var values in b){
|
|
|
617 if(b[values] instanceof Array){
|
|
|
618 for(var val in b[values]){
|
|
|
619 sum_b+=b[values][val][0];
|
|
|
620 }
|
|
|
621 }
|
|
|
622 }
|
|
|
623
|
|
|
624 if (sum_a<sum_b) return 1;
|
|
|
625 if (sum_a>sum_b) return -1;
|
|
|
626 return 0;
|
|
|
627 }
|
|
|
628 function sortBasesDesc(a,b){
|
|
|
629 sum_a=0
|
|
|
630 for(var values in a){
|
|
|
631 if(a[values] instanceof Array){
|
|
|
632 for(var val in a[values]){
|
|
|
633 sum_a+=a[values][val][1];
|
|
|
634 }
|
|
|
635 }
|
|
|
636 }
|
|
|
637 sum_b=0
|
|
|
638 for(var values in b){
|
|
|
639 if(b[values] instanceof Array){
|
|
|
640 for(var val in b[values]){
|
|
|
641 sum_b+=b[values][val][1];
|
|
|
642 }
|
|
|
643 }
|
|
|
644 }
|
|
|
645
|
|
|
646 if (sum_a<sum_b) return 1;
|
|
|
647 if (sum_a>sum_b) return -1;
|
|
|
648 return 0;
|
|
|
649 }
|
|
|
650
|
|
|
651 function sortBars(data,fun){
|
|
|
652 for(var values in data){
|
|
|
653 last = data[values].pop();
|
|
|
654 for(var val in data[values]){
|
|
|
655 data[values][val].sort(fun);
|
|
|
656 }
|
|
|
657 data[values].push(last);
|
|
|
658 }
|
|
|
659 }
|
|
|
660
|
|
|
661 function sortBars(data,fun){
|
|
|
662 for(var values in data){
|
|
|
663 last = data[values].pop();
|
|
|
664 for(var val in data[values]){
|
|
|
665 data[values][val].sort(fun);
|
|
|
666 }
|
|
|
667 data[values].push(last);
|
|
|
668 }
|
|
|
669 }
|
|
|
670
|
|
|
671
|
|
|
672
|
|
|
673 function barAsc(a,b){
|
|
|
674 if(a[0]<b[0]) return -1;
|
|
|
675 if(a[0]>b[0]) return 1;
|
|
|
676 return 0;
|
|
|
677 }
|
|
|
678
|
|
|
679 function barDesc(a,b){
|
|
|
680 if(a[0]<b[0]) return 1;
|
|
|
681 if(a[0]>b[0]) return -1;
|
|
|
682 return 0;
|
|
|
683 }
|
|
|
684
|
|
|
685 })(jQuery); |
