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1 from argparse import ArgumentParser
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2 import os
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3 from vmap import DNAIndex
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4
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5 if __name__ == "__main__":
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6
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7
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8 parser = ArgumentParser()
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9
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10 a = parser.add_argument
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11 a("-o","--html_file",dest="html_file")
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12 a("-d","--dir",dest="directory")
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13
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14 (options,args)= parser.parse_known_args()
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15
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16 args.insert(0,"dummy")
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17 try:
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18 DNAIndex.run(argv=args)
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19 except SystemExit:
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20 f = open(options.html_file,'w')
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21 rval = ["<html><head><title>BWA Index Galaxy Composite Dataset </title></head><body><p/>\n"]
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22 rval.append('<div>This composite dataset is composed of the following files:<p/><ul>')
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23 flist = os.listdir(options.directory)
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24
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25 for file in flist:
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26 rval.append( '<li><a href="%s">%s</a></li>' % ( file, file) )
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27 rval.append( '</ul></body></html>' )
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28
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29 f.write("\n".join( rval ))
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30 f.close()
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