# HG changeset patch
# User mzeidler
# Date 1380115926 14400
# Node ID d864c628fa1cf1ce55836553a76fc02dd6e8b708
# Parent  1074040101470212b4d1632eeffaf25cf9fc3a61
Uploaded

diff -r 107404010147 -r d864c628fa1c vhom_region.xml
--- a/vhom_region.xml	Wed Sep 25 09:26:07 2013 -0400
+++ b/vhom_region.xml	Wed Sep 25 09:32:06 2013 -0400
@@ -44,7 +44,7 @@
     
     --output_dir ${hom_output.files_path}
     
-    --jalview_jar_dir $JALVIEW_DIR
+    --jalview_jar_dir ${import os; os.path.join(os.path.dirname(__file__),'jalview')}
     
     
     --region_stats $stat_output