# HG changeset patch
# User mzeidler
# Date 1380113220 14400
# Node ID d50aaf4471c1092c35c599515f4486f679fc5ff0
# Parent  9337c80d667272e7eda48ecb9e535584e043befc
Uploaded

diff -r 9337c80d6672 -r d50aaf4471c1 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Sep 25 06:45:20 2013 -0400
+++ b/tool_dependencies.xml	Wed Sep 25 08:47:00 2013 -0400
@@ -71,5 +71,24 @@
                 </action>
             </actions>
         </install>
-    </package>   
+    </package>
+    <package name="jalview" version="2.8" >
+        <install version="1.0">
+            <actions>
+                <action type="move_file">
+                         <source>jalview/jalview.jar</source>
+                         <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_directory_files">
+                        <source_directory>jalview</source_directory>
+                        <destination_directory>$INSTALL_DIR/lib</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="JALVIEW_DIR" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            <action type="shell_command">ls $JALVIEW_DIR</action>    
+            </actions>
+        </install>
+    </package>
+   
 </tool_dependency>
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