# HG changeset patch
# User mzeidler
# Date 1380118699 14400
# Node ID 97eab933ae688759ac8e1bc8d82643a67395a4ca
# Parent  98bc401640638074ca1962ca9f6f8071748e6e46
Uploaded

diff -r 98bc40164063 -r 97eab933ae68 vhom_region.xml
--- a/vhom_region.xml	Wed Sep 25 10:16:20 2013 -0400
+++ b/vhom_region.xml	Wed Sep 25 10:18:19 2013 -0400
@@ -44,7 +44,7 @@
     
     --output_dir ${hom_output.files_path}
     
-    --jalview_jar_dir ${GALAXY_ROOT}/tool-data/shared/jalview
+    --jalview_jar_dir $__root_dir__/tool-data/shared/jalview
     
     
     --region_stats $stat_output